RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 SERPINB3P29508 390 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 CCND2P30279 289 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 ARL2P36404 184 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 PEX19P40855 299 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 ELK3P41970 407 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 GRIA1P42261 906 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 RAD23BP54727 409 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 FAAP100Q0VG06 881 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 HIF1AQ16665 826 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 TFDP3Q5H9I0 405 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 LIN9Q5TKA1 542 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 DCUN1D2Q6PH85 259 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 C3orf62Q6ZUJ4 267 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 SH2D5Q6ZV89 423 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 SYDE1Q6ZW31 735 aaPredicted RBP7.52□□□□□ -1.2
COL28A1-202ENST00000430711 DPH6Q7L8W6 267 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 FAM83AQ86UY5 434 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 TREML1Q86YW5 311 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 THNSL1Q8IYQ7 743 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 DTX3LQ8TDB6 740 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 PRPF31Q8WWY3 499 aaKnown RBP7.52□□□□□ -1.2
COL28A1-202ENST00000430711 VTI1AQ96AJ9 217 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 FAM111AQ96PZ2 611 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 IWS1Q96ST2 819 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 DHRS4Q9BTZ2 278 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 DHX33Q9H6R0 707 aaKnown RBP7.52□□□□□ -1.2
COL28A1-202ENST00000430711 RRAGCQ9HB90 399 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 MFHAS1Q9Y4C4 1052 aa7.52□□□□□ -1.2
COL28A1-202ENST00000430711 CFAP69A5D8W1 941 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 ZBTB42B2RXF5 422 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 MSCO60682 206 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 OATP04181 439 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 PSAPP07602 524 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 UBA1P22314 1058 aaKnown RBP7.52□□□□□ -1.21
COL28A1-202ENST00000430711 AMPD1P23109 780 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 CCND1P24385 295 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 PSMA2P25787 234 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 ATXN1P54253 815 aaKnown RBP7.52□□□□□ -1.21
COL28A1-202ENST00000430711 SNRPFP62306 86 aaKnown RBP7.52□□□□□ -1.21
COL28A1-202ENST00000430711 TFAMQ00059 246 aaKnown RBP7.52□□□□□ -1.21
COL28A1-202ENST00000430711 CA9Q16790 459 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 KBTBD12Q3ZCT8 623 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 ACSBG2Q5FVE4 666 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 FAM219BQ5XKK7 198 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 PPP1R21Q6ZMI0 780 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 MPP5Q8N3R9 675 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 BANPQ8N9N5 519 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 DEPTORQ8TB45 409 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 UBA3Q8TBC4 463 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 LRRC8CQ8TDW0 803 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 CFAP57Q96MR6 1250 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 NUDCD1Q96RS6 583 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 SMC6Q96SB8 1091 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 SYT15Q9BQS2 421 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 RNPEPL1Q9HAU8 725 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 MARCOQ9UEW3 520 aaPredicted RBP7.52□□□□□ -1.21
COL28A1-202ENST00000430711 SIX4Q9UIU6 781 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 SNCAIPQ9Y6H5 919 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 THSD7BQ9C0I4 1608 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 SSC5DA1L4H1 1573 aa7.52□□□□□ -1.21
COL28A1-202ENST00000430711 TCRBV9S1A1TA0A576 114 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 HMX2A2RU54 273 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 DPPA5A6NC42 116 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 SPATA31C2B4DYI2 1134 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 SMAPO00193 183 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ZC3H11AO75152 810 aaKnown RBP eCLIP7.51□□□□□ -1.21
COL28A1-202ENST00000430711 LGR5O75473 907 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 NFICP08651 508 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 CXCL8P10145 99 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 CD19P15391 556 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ADORA2AP29274 412 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ETV4P43268 484 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 PTDSS1P48651 473 aaKnown RBP7.51□□□□□ -1.21
COL28A1-202ENST00000430711 BASP1P80723 227 aaKnown RBP7.51□□□□□ -1.21
COL28A1-202ENST00000430711 CAV1Q03135 178 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 KPNB1Q14974 876 aaKnown RBP7.51□□□□□ -1.21
COL28A1-202ENST00000430711 MORF4L2Q15014 288 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 TAF11Q15544 211 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 LY6KQ17RY6 165 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 TREML2Q5T2D2 321 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 HHATQ5VTY9 493 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 DPY19L2Q6NUT2 758 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 TRMT10BQ6PF06 316 aaKnown RBP7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ZCCHC23Q6ZST2 131 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ENOSF1Q7L5Y1 443 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ZNF677Q86XU0 584 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 RCOR2Q8IZ40 523 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ANKRD35Q8N283 1001 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 MCPH1Q8NEM0 835 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 FLAD1Q8NFF5 587 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 MICAL1Q8TDZ2 1067 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 COPS5Q92905 334 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 ATP6V0A1Q93050 837 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 NKD2Q969F2 451 aaPredicted RBP7.51□□□□□ -1.21
COL28A1-202ENST00000430711 TTC17Q96AE7 1141 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 GPRASP2Q96D09 838 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 SPDL1Q96EA4 605 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 PTCD3Q96EY7 689 aaKnown RBP7.51□□□□□ -1.21
COL28A1-202ENST00000430711 IFT74Q96LB3 600 aa7.51□□□□□ -1.21
COL28A1-202ENST00000430711 MMP19Q99542 508 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms