RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 SCAMP2O15127 329 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 POLR1CO15160 346 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TBCAO75347 108 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SNUPNO95149 360 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CRYABP02511 175 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 HMBSP08397 361 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM163BP0C2L3 166 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 USP17L7P0C7H9 530 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 BPIP17213 487 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 POLR2EP19388 210 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 OTX2P32243 289 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PEX19P40855 299 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TNK2Q07912 1038 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PRKD1Q15139 912 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PPP2R5AQ15172 486 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 MARCH8Q5T0T0 291 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC181Q5TID7 509 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 C11orf57Q6ZUT1 292 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 FMNL3Q8IVF7 1028 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 OR10G6Q8NH81 332 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 OR2W6PQ8NHA6 318 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CACTINQ8WUQ7 758 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SMARCD2Q92925 531 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ARL8AQ96BM9 186 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 VMP1Q96GC9 406 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TSPYL1Q9H0U9 437 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 DEF6Q9H4E7 631 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SEPSECSQ9HD40 501 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJC17Q9NVM6 304 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 AJAP1Q9UKB5 411 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SNCAIPQ9Y6H5 919 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CFAP65Q6ZU64 1925 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CPDO75976 1380 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CEMIPQ8WUJ3 1361 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 GOLGA6L4A6NEF3 574 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PRR19A6NJB7 356 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 GOLGA8AA7E2F4 631 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 EEF1E1-BLOC1S5C9J1V9 151 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PROB1E7EW31 1015 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIM77I1YAP6 450 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 EEF1E1O43324 174 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 C1SP09871 688 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PCP11498 1178 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 GSPT1P15170 499 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SRD5A1P18405 259 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 HALP42357 657 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 DEFB103AP81534 67 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIM28Q13263 835 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 KCNAB2Q13303 367 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 AP3B2Q13367 1082 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 KCNC3Q14003 757 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 C16orf72Q14CZ0 275 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ABHD17BQ5VST6 288 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 MBLAC2Q68D91 279 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 EFL1Q7Z2Z2 1120 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 MIER3Q7Z3K6 550 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 TMCO2Q7Z6W1 182 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 SYTL1Q8IYJ3 562 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ZDHHC14Q8IZN3 488 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 L3MBTL4Q8NA19 623 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 AGBL5Q8NDL9 886 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 NCOA7Q8NI08 942 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 STAG1Q8WVM7 1258 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 PSPC1Q8WXF1 523 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAAF4Q8WXU2 420 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 NKD1Q969G9 470 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 C2orf40Q9H1Z8 148 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 NOL6Q9H6R4 1146 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 CAPN10Q9HC96 672 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 KLHL21Q9UJP4 597 aa2.91□□□□□ -1.94
CCDC88A-205ENST00000426576 ABCA5Q8WWZ7 1642 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 SYCP2Q9BX26 1530 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 UTRNP46939 3433 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 CUL7Q14999 1698 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 ESYT3A0FGR9 886 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 A8MU76 341 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 H3BMM5 538 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC31A1O15431 190 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 PPP1R11O60927 126 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 FUCA1P04066 466 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 APOA4P06727 396 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 TPM2P07951 284 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC175P0C221 793 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 KCNA3P22001 575 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 HOXA7P31268 230 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 NLRP11P59045 1033 aaKnown RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 SELENOVP59797 346 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF280AP59817 542 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 FOXO1Q12778 655 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 SETMARQ53H47 684 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 TDRD10Q5VZ19 366 aaKnown RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 NAPEPLDQ6IQ20 393 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 GKN2Q86XP6 184 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 UNC45BQ8IWX7 931 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 ABRAQ8N0Z2 381 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 VN1R2Q8NFZ6 395 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 MCOLN3Q8TDD5 553 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 SMARCE1Q969G3 411 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 TUBGCP3Q96CW5 907 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 NUP58Q9BVL2 599 aa2.9□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms