RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PRR23CQ6ZRP0 262 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 UNC13DQ70J99 1090 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 DPH6Q7L8W6 267 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 CPA6Q8N4T0 437 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 FNBP1Q96RU3 617 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 ZNF518BQ9C0D4 1074 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 LRRC27Q9C0I9 530 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 RNF38Q9H0F5 515 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 RXFP3Q9NSD7 469 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 SMPD4Q9NXE4 827 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 ZMYM5Q9UJ78 669 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 PCDHA7Q9UN72 937 aa12.36□□□□□ -0.43
USP4-204ENST00000416417 ZNF638Q14966 1978 aaKnown RBP12.35□□□□□ -0.43
USP4-204ENST00000416417 RPP40O75818 363 aaKnown RBP12.35□□□□□ -0.43
USP4-204ENST00000416417 CLSTN1O94985 981 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 CCDC192P0DO97 292 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 ZSCAN22P10073 491 aaPredicted RBP12.35□□□□□ -0.43
USP4-204ENST00000416417 PTPN1P18031 435 aaKnown RBP12.35□□□□□ -0.43
USP4-204ENST00000416417 ANXA13P27216 316 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 CNR2P34972 360 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 ME1P48163 572 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 EHHADHQ08426 723 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 WDR72Q3MJ13 1102 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 SCARA5Q6ZMJ2 495 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 SFTPA1Q8IWL2 248 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 FSIP1Q8NA03 581 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 XXYLT1Q8NBI6 393 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 MYCBPAPQ8TBZ2 947 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 SPATA18Q8TC71 538 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 CD101Q93033 1021 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 SPATA17Q96L03 361 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 B3GNT5Q9BYG0 378 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 CUEDC2Q9H467 287 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 SMYD3Q9H7B4 428 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 SERTAD1Q9UHV2 236 aa12.35□□□□□ -0.43
USP4-204ENST00000416417 LEFTY2O00292 366 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 F13A1P00488 732 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 TNNC1P63316 161 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 ORC1Q13415 861 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 CSRP2Q16527 193 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 DENND5BQ6ZUT9 1274 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 GAB3Q8WWW8 586 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 ATP2A3Q93084 1043 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 CNTNAP3BQ96NU0 1288 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 RTKNQ9BST9 563 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 CNTNAP3Q9BZ76 1288 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 KIAA1586Q9HCI6 787 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP4-204ENST00000416417 TRPM5Q9NZQ8 1165 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 ATG2BQ96BY7 2078 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 NCOR2Q9Y618 2525 aa12.34□□□□□ -0.43
USP4-204ENST00000416417 ZNF840PA6NDX5 716 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 SOBPA7XYQ1 873 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 A8MXQ7 604 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 EXOC3O60645 756 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 PHACTR2O75167 634 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 DRD1P21728 446 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 HOXA6P31267 233 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 OPRD1P41143 372 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 DNM1Q05193 864 aaKnown RBP12.33□□□□□ -0.44
USP4-204ENST00000416417 MESP2Q0VG99 397 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 TAF10Q12962 218 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 TRPC3Q13507 836 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 DMC1Q14565 340 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 GAB4Q2WGN9 574 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 C2orf27AQ580R0 203 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 RESP18Q5W5W9 173 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 CNNM4Q6P4Q7 775 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 VSTM1Q6UX27 236 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 FILIP1Q7Z7B0 1213 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 KCNK16Q96T55 309 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 SDCBP2Q9H190 292 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 XYLT2Q9H1B5 865 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 ZDHHC4Q9NPG8 344 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 ARHGAP26Q9UNA1 814 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 CPQQ9Y646 472 aa12.33□□□□□ -0.44
USP4-204ENST00000416417 LRRIQ3A6PVS8 624 aaPredicted RBP12.32□□□□□ -0.44
USP4-204ENST00000416417 SLC30A4O14863 429 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 TRIM66O15016 1216 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 KLRC4O43908 158 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 ATG13O75143 517 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 TACC1O75410 805 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 SDHBP21912 280 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 SLC6A11P48066 632 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 DLG4P78352 724 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 AMPD2Q01433 879 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 BIRC3Q13489 604 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 MAPRE1Q15691 268 aaKnown RBP12.32□□□□□ -0.44
USP4-204ENST00000416417 KNOP1Q1ED39 458 aaKnown RBP12.32□□□□□ -0.44
USP4-204ENST00000416417 AASDHQ4L235 1098 aaPredicted RBP12.32□□□□□ -0.44
USP4-204ENST00000416417 PPM1JQ5JR12 505 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 TDRD10Q5VZ19 366 aaKnown RBP12.32□□□□□ -0.44
USP4-204ENST00000416417 TCEAL6Q6IPX3 200 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 CACNA2D4Q7Z3S7 1137 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 TTC30AQ86WT1 665 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 CCDC33Q8N5R6 958 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 B3GALNT2Q8NCR0 500 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 NETO1Q8TDF5 533 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 TCEAL3Q969E4 200 aa12.32□□□□□ -0.44
USP4-204ENST00000416417 C8orf48Q96LL4 319 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms