RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ITGA10O75578 1167 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 FSBPO95073 299 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 RHCEP18577 417 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 VCAM1P19320 739 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 HTR1BP28222 390 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 SARSP49591 514 aaKnown RBP7.31□□□□□ -1.24
USP40-202ENST00000409945 CCNA1P78396 465 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 RHDQ02161 417 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 SLC9C1Q4G0N8 1177 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 ANKRD53Q8N9V6 530 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 RAET1EQ8TD07 263 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 NSUN6Q8TEA1 469 aaKnown RBP7.31□□□□□ -1.24
USP40-202ENST00000409945 UIMC1Q96RL1 719 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 GPHA2Q96T91 129 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 C7orf25Q9BPX7 421 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 DNAJC18Q9H819 358 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 MYH8P13535 1937 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 TNPO2O14787 897 aaKnown RBP7.31□□□□□ -1.24
USP40-202ENST00000409945 MYL1P05976 194 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 HOXA7P31268 230 aaPredicted RBP7.31□□□□□ -1.24
USP40-202ENST00000409945 SHMT1P34896 483 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 CASRP41180 1078 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 PSMC4P43686 418 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 ICA1Q05084 483 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 GABPAQ06546 454 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 FAM110CQ1W6H9 321 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 MCMDC2Q4G0Z9 681 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 CTR9Q6PD62 1173 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 C17orf99Q6UX52 265 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 NPNTQ6UXI9 565 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 TAS1R1Q7RTX1 841 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 DCBLD1Q8N8Z6 715 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 PLA2G15Q8NCC3 412 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 OTUD7AQ8TE49 926 aaPredicted RBP7.31□□□□□ -1.24
USP40-202ENST00000409945 RUFY2Q8WXA3 655 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 LPAR1Q92633 364 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 C1GALT1C1Q96EU7 318 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 RPL10LQ96L21 214 aaKnown RBP7.31□□□□□ -1.24
USP40-202ENST00000409945 MRGPRX4Q96LA9 322 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 R3HDMLQ9H3Y0 253 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 C1orf112Q9NSG2 853 aa7.31□□□□□ -1.24
USP40-202ENST00000409945 BCCIPQ9P287 314 aaKnown RBP eCLIP7.31□□□□□ -1.24
USP40-202ENST00000409945 B4GALT3O60512 393 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 STC2O76061 302 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 TSPAN15O95858 294 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 IGHDP01880 384 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 KIR2DL3P43628 341 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 SYT8Q8NBV8 401 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 PJA1Q8NG27 643 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 PARD3BQ8TEW8 1205 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 CEP95Q96GE4 821 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 SAMD11Q96NU1 681 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 HOXC10Q9NYD6 342 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 SALL3Q9BXA9 1300 aa7.3□□□□□ -1.24
USP40-202ENST00000409945 PMM2O15305 246 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 CYP7B1O75881 506 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 FARP2O94887 1054 aaPredicted RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 FTLP02792 175 aaPredicted RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 MYL3P08590 195 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 TSPY3P0CV98 308 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 TSPY8P0CW00 308 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 ECHS1P30084 290 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 MEOX1P50221 254 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 ADCY7P51828 1080 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 UBXN2AP68543 259 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 PRAMEF14Q5SWL7 426 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 TREML2Q5T2D2 321 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 PQLC1Q8N2U9 271 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 ANKRD13CQ8N6S4 541 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 GPRC5AQ8NFJ5 357 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 MDM1Q8TC05 714 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 IFI44Q8TCB0 444 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 DYNLL2Q96FJ2 89 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 C12orf42Q96LP6 360 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 MYOCQ99972 504 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 OR10A2Q9H208 303 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 AGO3Q9H9G7 860 aaKnown RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 FNIP2Q9P278 1114 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 AJAP1Q9UKB5 411 aaPredicted RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 VWA7Q9Y334 891 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 PCDHA3Q9Y5H8 950 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 SIPA1L1O43166 1804 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 PTPRFP10586 1907 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 ADAMTS20P59510 1910 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 BAZ2AQ9UIF9 1905 aaKnown RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 CYP2D6P10635 497 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 PCP11498 1178 aaKnown RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 MAPK4P31152 587 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 GUCY1A2P33402 732 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 NT5C2P49902 561 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 BPIFB4P59827 614 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 RRP1BQ14684 758 aaKnown RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 USP10Q14694 798 aaKnown RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 SKAP1Q86WV1 359 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 LINC01356Q8N9X3 169 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 FAM193BQ96PV7 902 aaPredicted RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 RNF41Q9H4P4 317 aaPredicted RBP7.29□□□□□ -1.24
USP40-202ENST00000409945 ATP6V0A4Q9HBG4 840 aa7.29□□□□□ -1.24
USP40-202ENST00000409945 SRRDQ9UH36 339 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms