RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 FUT10Q6P4F1 479 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 EMBQ6PCB8 327 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 DARS2Q6PI48 645 aaKnown RBP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 KCNT2Q6UVM3 1135 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 DDX53Q86TM3 631 aaKnown RBP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 TTC30BQ8N4P2 665 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 TTPALQ9BTX7 342 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 SAGE1Q9NXZ1 904 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 MOSPD1Q9UJG1 213 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 GIT1Q9Y2X7 761 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 COL1A2P08123 1366 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 A0A1W2PQC6 194 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 F8VZ95 297 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 RFXAPO00287 272 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 ENPP3O14638 875 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 CA3P07451 260 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 LHX1P48742 406 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 BASP1P80723 227 aaKnown RBP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 CCDC142Q17RM4 750 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 C9orf57Q5W0N0 161 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 TRPM5Q9NZQ8 1165 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 REXO2Q9Y3B8 237 aaKnown RBP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 H7C4K7 107 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 MDM4O15151 490 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 ATG7O95352 703 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 ETFBP38117 255 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 LILRA4P59901 499 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 ZACNQ401N2 412 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 CFAP221Q4G0U5 840 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 KCTD16Q68DU8 428 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 SLC35G2Q8TBE7 412 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 CRYGNQ8WXF5 182 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 PAIP2Q9BPZ3 127 aaKnown RBP10.8□□□□□ -0.68
COL6A3-205ENST00000392004 CIPCQ9C0C6 399 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 DPEP3Q9H4B8 488 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 OSGEPQ9NPF4 335 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 ADAM28Q9UKQ2 775 aa10.8□□□□□ -0.68
COL6A3-205ENST00000392004 MYBPHLA2RUH7 354 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 STK10O94804 968 aaKnown RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 FGGP02679 453 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 MYBL2P10244 700 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 TCP1P17987 556 aaKnown RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 EPHB1P54762 984 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 SLC7A5Q01650 507 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 GRIK3Q13003 919 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 CBX2Q14781 532 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 TIGD5Q53EQ6 642 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 ZNF571Q7Z3V5 609 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 TFAP2DQ7Z6R9 452 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 IRF2BP1Q8IU81 584 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 IFT20Q8IY31 132 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 DNAAF3Q8N9W5 541 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 RUBCNQ92622 972 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 RPRD1AQ96P16 312 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 AGAP3Q96P47 875 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 KRT12Q99456 494 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 EMILIN2Q9BXX0 1053 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 MRPS23Q9Y3D9 190 aaKnown RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 PPME1Q9Y570 386 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 RIF1Q5UIP0 2472 aaKnown RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 A0A0U1RQF3 1178 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 E5RJQ4 531 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 CLGNO14967 610 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 MCL1Q07820 350 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 NNTQ13423 1086 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 MMGT1Q8N4V1 131 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 AENQ8WTP8 325 aaKnown RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 TRIM11Q96F44 468 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 DNAJC7Q99615 494 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 TSEN34Q9BSV6 310 aaKnown RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 LRRC1Q9BTT6 524 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 ULBP1Q9BZM6 244 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 ZNF518BQ9C0D4 1074 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 CLDND1Q9NY35 253 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 TXNDC16Q9P2K2 825 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 SCINQ9Y6U3 715 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 GOLGA8MH3BSY2 632 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 AGPSO00116 658 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 MEFVO15553 781 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 MYOGP15173 224 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 ZNF131P52739 623 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 TARBP2Q15633 366 aaKnown RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 FAM182AQ5T1J6 154 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 C10orf76Q5T2E6 689 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 SLC39A4Q6P5W5 647 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 CCDC121Q6ZUS5 278 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 CTAGE3PQ8IX95 158 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 C12orf76Q8N812 135 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-205ENST00000392004 ASNSD1Q9NWL6 643 aa10.79□□□□□ -0.68
COL6A3-205ENST00000392004 LAMB2P55268 1798 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 GJA8P48165 433 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 SNRPFP62306 86 aaKnown RBP10.78□□□□□ -0.68
COL6A3-205ENST00000392004 GPM6BQ13491 265 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 EFHC2Q5JST6 749 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 IL31Q6EBC2 164 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 DENND1BQ6P3S1 775 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 B3GALNT2Q8NCR0 500 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 DDI1Q8WTU0 396 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 MYLPFQ96A32 169 aa10.78□□□□□ -0.68
COL6A3-205ENST00000392004 ERGIC2Q96RQ1 377 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms