RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 GDPD5Q8WTR4 605 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 SNX19Q92543 992 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 SNX13Q9Y5W8 968 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 NFIBO00712 420 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 GH1P01241 217 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 KLRK1P26718 216 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 FCGRTP55899 365 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 PDAP1Q13442 181 aaKnown RBP20.43■□□□□ 0.86
SHANK1-203ENST00000391813 SGSM1Q2NKQ1 1148 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 CCDC103Q8IW40 242 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 FAM71DQ8N9W8 422 aa20.43■□□□□ 0.86
SHANK1-203ENST00000391813 OXNAD1Q96HP4 312 aaPredicted RBP20.43■□□□□ 0.86
SHANK1-203ENST00000391813 WFS1O76024 890 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 CBX6O95503 412 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 NR3C2P08235 984 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 NUDT17P0C025 328 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 PTDSS1P48651 473 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 TWF2Q6IBS0 349 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 ZBTB49Q6ZSB9 765 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 EFL1Q7Z2Z2 1120 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 SCFD2Q8WU76 684 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUSP9Q99956 384 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 F5H423 210 aaPredicted RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DRG2P55039 364 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 KYAT1Q16773 422 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 FKBP1CQ5VVH2 108 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 PPHLN1Q8NEY8 458 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 NR1H4Q96RI1 486 aaPredicted RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 BRD8Q9H0E9 1235 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 UTP6Q9NYH9 597 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 CTNNAL1Q9UBT7 734 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 A0A1B0GW55 424 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 UBE2Q2LH0YL09 131 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUX4L2P0CJ85 424 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUX4L3P0CJ86 424 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUX4L4P0CJ87 422 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUX4L5P0CJ88 424 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUX4L6P0CJ89 424 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUX4L7P0CJ90 424 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 CIITAP33076 1130 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 SEPT1Q8WYJ6 367 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 IFT43Q96FT9 208 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 PAIP1Q9H074 479 aaKnown RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DUX4Q9UBX2 424 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DNAJC16Q9Y2G8 782 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 STAT5BP51692 787 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 KCNJ2P63252 427 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 DMC1Q14565 340 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 RMND5BQ96G75 393 aaPredicted RBP20.42■□□□□ 0.86
SHANK1-203ENST00000391813 HACD3Q9P035 362 aa20.42■□□□□ 0.86
SHANK1-203ENST00000391813 HLA-DRAP01903 254 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 TBL3Q12788 808 aaKnown RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 ZC3H12BQ5HYM0 836 aaKnown RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 THEMIS2Q5TEJ8 643 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 DSTYKQ6XUX3 929 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 DDX18Q9NVP1 670 aaKnown RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 HUS1O60921 280 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 BGNP21810 368 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 CDK16Q00536 496 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 TFDP3Q5H9I0 405 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 C6orf10Q5SRN2 563 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 SYCP2LQ5T4T6 812 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 P3H2Q8IVL5 708 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 ATAD3AQ9NVI7 634 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 HNRNPCL2B2RXH8 293 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 FCGR1AP12314 374 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 RPS6P62753 249 aaKnown RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 BOLA3Q53S33 107 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 BEST2Q8NFU1 509 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 CCDC28BQ9BUN5 200 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 SMARCAD1Q9H4L7 1026 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 CAMTA1Q9Y6Y1 1673 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 ZBTB39O15060 712 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 XKR3Q5GH77 459 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 LMBRD2Q68DH5 695 aaPredicted RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 MARK2Q7KZI7 788 aaKnown RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 DEFB107AQ8IZN7 70 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 URGCPQ8TCY9 931 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 ZNF75CPQ92670 426 aaPredicted RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 PTPRN2Q92932 1015 aa20.41■□□□□ 0.86
SHANK1-203ENST00000391813 FAM217BQ9NTX9 383 aaPredicted RBP20.41■□□□□ 0.86
SHANK1-203ENST00000391813 PROSCO94903 275 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 DLGAP3O95886 979 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 MAP3K7CLP57077 242 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 MYBPC2Q14324 1141 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 CCDC85BQ15834 202 aaPredicted RBP20.4■□□□□ 0.86
SHANK1-203ENST00000391813 PARP6Q2NL67 630 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 TBC1D10AQ9BXI6 508 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 NRDE2Q9H7Z3 1164 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 CNGB3Q9NQW8 809 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 COPG2Q9UBF2 871 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 TTKP33981 857 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 OTUD4Q01804 1114 aaKnown RBP20.4■□□□□ 0.86
SHANK1-203ENST00000391813 SMAD1Q15797 465 aaKnown RBP20.4■□□□□ 0.86
SHANK1-203ENST00000391813 LACTB2Q53H82 288 aaPredicted RBP20.4■□□□□ 0.86
SHANK1-203ENST00000391813 USP50Q70EL3 339 aaPredicted RBP20.4■□□□□ 0.86
SHANK1-203ENST00000391813 KYQ8NBH2 561 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 PPP1R2P1Q96PQ5 205 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 PCDH9Q9HC56 1237 aa20.4■□□□□ 0.86
SHANK1-203ENST00000391813 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms