RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SURF1Q15526 300 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 EEF1DP3Q658K8 133 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 CROCCP2Q86T23 111 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 CCDC25Q86WR0 208 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 LPPQ93052 612 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 TLCD1Q96CP7 247 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 HOMER3Q9NSC5 361 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 WHRNQ9P202 907 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 USTQ9Y2C2 406 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 YBX2Q9Y2T7 364 aaKnown RBP16.37■□□□□ 0.21
CCDC40-202ENST00000374876 HES2Q9Y543 173 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 FAM169AQ9Y6X4 670 aa16.37■□□□□ 0.21
CCDC40-202ENST00000374876 TLDC2A0PJX2 215 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 MEIS3P2A8K0S8 358 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 FGFR1P11362 822 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 CD58P19256 250 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 MYL6P60660 151 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 PPARDQ03181 441 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 MCL1Q07820 350 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 TRPC3Q13507 836 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 ZNF473Q8WTR7 871 aaKnown RBP16.36■□□□□ 0.21
CCDC40-202ENST00000374876 PGM2Q96G03 612 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 CCT8L2Q96SF2 557 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 DCLK3Q9C098 648 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 NIF3L1Q9GZT8 377 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 RASSF4Q9H2L5 321 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 PDZD7Q9H5P4 517 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 CNOT10Q9H9A5 744 aaKnown RBP16.36■□□□□ 0.21
CCDC40-202ENST00000374876 GBF1Q92538 1859 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 LCHNA4D1U4 455 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 NPTXRO95502 500 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 FAM107AO95990 144 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 STAG3L1P0CL83 205 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 RALAP11233 206 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 ATF7P17544 494 aaPredicted RBP16.36■□□□□ 0.21
CCDC40-202ENST00000374876 ITIH2P19823 946 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 ADCY2Q08462 1091 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 SGSM1Q2NKQ1 1148 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 ATF7IP2Q5U623 682 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 SCARA3Q6AZY7 606 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 NPAS4Q8IUM7 802 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 KATNAL2Q8IYT4 538 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 UBR7Q8N806 425 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 FEZF2Q8TBJ5 459 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 MYCBPAPQ8TBZ2 947 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 SNF8Q96H20 258 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 CCDC114Q96M63 670 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 YME1L1Q96TA2 773 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 HERPUD2Q9BSE4 406 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 HEMGNQ9BXL5 484 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 RNF39Q9H2S5 420 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 TMEM161AQ9NX61 479 aa16.36■□□□□ 0.21
CCDC40-202ENST00000374876 CPSF3Q9UKF6 684 aaKnown RBP16.36■□□□□ 0.21
CCDC40-202ENST00000374876 SMIM23A6NLE4 172 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 RGS16O15492 202 aaPredicted RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 RIPK2O43353 540 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 DGKIO75912 1065 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 MMP8P22894 467 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 GJC1P36383 396 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 TAS2R40P59535 323 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 SMAD3P84022 425 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 TFAMQ00059 246 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 PTK6Q13882 451 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 C6orf118Q5T5N4 469 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 SLC27A1Q6PCB7 646 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 SPATS2Q86XZ4 545 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 SMG8Q8ND04 991 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 ATL2Q8NHH9 583 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 RAD9AQ99638 391 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 TRAIPQ9BWF2 469 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 NKX2-4Q9H2Z4 354 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 CISHQ9NSE2 258 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 IP6K2Q9UHH9 426 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 GMNCA6NCL1 334 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 O00370 1275 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 ARHGEF15O94989 841 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 LSM8O95777 96 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 CALB1P05937 261 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 CA3P07451 260 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 TMEM191BP0C7N4 346 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 DNAJB2P25686 324 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 CETN2P41208 172 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 FAM43BQ6ZT52 329 aaPredicted RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 TRMT10CQ7L0Y3 403 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 ZNF598Q86UK7 904 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 EXD1Q8NHP7 514 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 UHMK1Q8TAS1 419 aaKnown RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 APOL6Q9BWW8 343 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 OSBPL8Q9BZF1 889 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 TRIM6Q9C030 488 aaPredicted RBP16.35■□□□□ 0.21
CCDC40-202ENST00000374876 MSRAQ9UJ68 235 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 IPPQ9Y573 584 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 INSL6Q9Y581 213 aa16.35■□□□□ 0.21
CCDC40-202ENST00000374876 CDH23Q9H251 3354 aa16.34■□□□□ 0.21
CCDC40-202ENST00000374876 GJB6O95452 261 aa16.34■□□□□ 0.21
CCDC40-202ENST00000374876 EOMESO95936 686 aa16.34■□□□□ 0.21
CCDC40-202ENST00000374876 ATF2P15336 505 aa16.34■□□□□ 0.21
CCDC40-202ENST00000374876 MAGEA9P43362 315 aa16.34■□□□□ 0.21
CCDC40-202ENST00000374876 HTRA4P83105 476 aaPredicted RBP16.34■□□□□ 0.21
CCDC40-202ENST00000374876 KLF1Q13351 362 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms