RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 BECN2A8MW95 431 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 AGRPO00253 132 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 PSMA7O14818 248 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 TGFB1I1O43294 461 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 RRP9O43818 475 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 RFPL1O75677 317 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 UBOX5O94941 541 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 GJB1P08034 283 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SMIM10L2AP0DMW4 78 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SMIM10L2BP0DMW5 78 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 RARBP10826 455 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 FGFR1P11362 822 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 RAG1P15918 1043 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 ZNF18P17022 549 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 CLCN3P51790 818 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 YARSP54577 528 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 NCKAP1LP55160 1127 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 PEX3P56589 373 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 RTP1P59025 263 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 ADAM17P78536 824 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 ZNF200P98182 395 aaPredicted RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 GTF2BQ00403 316 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 PPFIA1Q13136 1202 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 KCNA10Q16322 511 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 KNOP1Q1ED39 458 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 BMT2Q1RMZ1 405 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 KIAA0753Q2KHM9 967 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 HSP90AA4PQ58FG1 418 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 FYB2Q5VWT5 728 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 EFCAB12Q6NXP0 572 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 MTHFD1LQ6UB35 978 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 CXCL17Q6UXB2 119 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 HAUS6Q7Z4H7 955 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 TMEM161BQ8NDZ6 487 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 USP33Q8TEY7 942 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 CYB5D2Q8WUJ1 264 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 FAM168AQ92567 244 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 PPP1R14AQ96A00 147 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 GTPBP4Q9BZE4 634 aaKnown RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 ST6GALNAC4Q9H4F1 302 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 PPCSQ9HAB8 311 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 XPNPEP3Q9NQH7 507 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 SUCLA2Q9P2R7 463 aaPredicted RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 ZNF215Q9UL58 517 aaPredicted RBP3.87□□□□□ -1.79
MCF2-202ENST00000370573 ZMYM2Q9UBW7 1377 aa3.87□□□□□ -1.79
MCF2-202ENST00000370573 TRIP12Q14669 1992 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 GRIN2DO15399 1336 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ANKRD34BA5PLL1 514 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 TISP43B9A030 160 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 K7ENM7 598 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 OPA1O60313 960 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 PRKD3O94806 890 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 GCNT3O95395 438 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 EDN1P05305 212 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ASGR1P07306 291 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 CPEP16870 476 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 BPIP17213 487 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 JUNBP17275 347 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 HOXC8P31273 242 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ETV3P41162 512 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 SUMO1P63165 101 aaKnown RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 LAMTOR4Q0VGL1 99 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 STIM1Q13586 685 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 CAPSQ13938 189 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 GALEQ14376 348 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 GFOD2Q3B7J2 385 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 L1TD1Q5T7N2 865 aaKnown RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 ABHD17CQ6PCB6 329 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 APTXQ7Z2E3 356 aaKnown RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 ATG4DQ86TL0 474 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 KIAA0319LQ8IZA0 1049 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 LMBR1Q8WVP7 490 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 E2F7Q96AV8 911 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 EEF2KMTQ96G04 330 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ZNF668Q96K58 619 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 KRTAP4-12Q9BQ66 201 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 MTG1Q9BT17 334 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 KLHL25Q9H0H3 589 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 LARSQ9P2J5 1176 aaKnown RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 ARHGAP28Q9P2N2 729 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 HDAC6Q9UBN7 1215 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 DAAM1Q9Y4D1 1078 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 COL1A2P08123 1366 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 KAT6AQ92794 2004 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 SCN10AQ9Y5Y9 1956 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 DENND3A2RUS2 1198 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 MBLAC1A4D2B0 266 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 RRN3P2A6NIE6 340 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ZNF891A8MT65 544 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 ANKRD63C9JTQ0 380 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 GOLGA6L19H0YKK7 550 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 PDXKO00764 312 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 CLIC2O15247 247 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 EIF3DO15371 548 aaKnown RBP eCLIP3.86□□□□□ -1.79
MCF2-202ENST00000370573 MAGEB2O15479 319 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 BRINP1O60477 761 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 DLX3O60479 287 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ADCY5O95622 1261 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 SRGAP2CP0DJJ0 459 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms