RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CCNI2Q6ZMN8 369 aaPredicted RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 ANKRD13AQ8IZ07 590 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 USP38Q8NB14 1042 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 INPP5DQ92835 1189 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ERP27Q96DN0 273 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 SEC16BQ96JE7 1060 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 GLT1D1Q96MS3 346 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CCT8L2Q96SF2 557 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 NLNQ9BYT8 704 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 TRIM8Q9BZR9 551 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 FAM49BQ9NUQ9 324 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 LNPEPQ9UIQ6 1025 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 GTF3C4Q9UKN8 822 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ADGRA3Q8IWK6 1321 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CCL15-CCL14A0A0B4J2E2 113 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 IGF2BP3O00425 579 aaKnown RBP eCLIP6.7□□□□□ -1.34
UPF2-201ENST00000356352 UPP2O95045 317 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 KRT75O95678 551 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 RBP1P09455 135 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ERVK-10P10266 1014 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 RBP3P10745 1247 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 VHLP40337 213 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 RANBP1P43487 201 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 RENBPP51606 427 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 NR1I3Q14994 352 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ANGPT1Q15389 498 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CCL15Q16663 113 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 RABL6Q3YEC7 729 aaPredicted RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 ARHGAP17Q68EM7 881 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 TTC33Q6PID6 262 aaPredicted RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 CLEC17AQ6ZS10 378 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 IFNEQ86WN2 208 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 TMEM169Q96HH4 297 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 GJD4Q96KN9 370 aaPredicted RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 DEPDC7Q96QD5 511 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 PARVBQ9HBI1 364 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 POLD4Q9HCU8 107 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CFAP65Q6ZU64 1925 aaKnown RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 TMEM120BA0PK00 339 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CARNS1A5YM72 827 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 VSNL1P62760 191 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 IRX1P78414 480 aaPredicted RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 ALDH6A1Q02252 535 aaKnown RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 DSG1Q02413 1049 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CYP51A1Q16850 503 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 KLHDC7AQ5VTJ3 777 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 LRRC8DQ7L1W4 858 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ITIH5Q86UX2 942 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ENOPH1Q9UHY7 261 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 TBX20Q9UMR3 447 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CAND2O75155 1236 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 TGM2P21980 687 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 MAD2L1Q13257 205 aaPredicted RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 CDC42EP5Q6NZY7 148 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 C11orf88Q6PI97 169 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 TRAF7Q6Q0C0 670 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 MOXD1Q6UVY6 613 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 SLC22A9Q8IVM8 553 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 AGBL3Q8NEM8 1001 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 OLFM1Q99784 485 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 BBS2Q9BXC9 721 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 ADGRE3Q9BY15 652 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 PDGFCQ9NRA1 345 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 TBC1D13Q9NVG8 400 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 PAIP2BQ9ULR5 123 aaKnown RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 MED14O60244 1454 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 MYMKA6NI61 221 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 SAC3D1A6NKF1 404 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 NKRFO15226 690 aaKnown RBP eCLIP6.69□□□□□ -1.34
UPF2-201ENST00000356352 STRNO43815 780 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 MBL2P11226 248 aaPredicted RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 CYP2B6P20813 491 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 EPHB2P29323 1055 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 GPC1P35052 558 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 LHX1P48742 406 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 CHRNB3Q05901 458 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 ITIH4Q14624 930 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 PDIA6Q15084 440 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 SGO1Q5FBB7 561 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 DENND1BQ6P3S1 775 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 TMEM154Q6P9G4 183 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 RIN3Q8TB24 985 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 VPS33AQ96AX1 596 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 C9orf72Q96LT7 481 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 LRRC40Q9H9A6 602 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.69□□□□□ -1.34
UPF2-201ENST00000356352 AHSPQ9NZD4 102 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 STK39Q9UEW8 545 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 DBR1Q9UK59 544 aaKnown RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 JCADQ9P266 1359 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 TRPM1Q7Z4N2 1603 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 H7C0S8 307 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 TM9SF1O15321 606 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 NCAM2O15394 837 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 PDHBP11177 359 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 HPGDP15428 266 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 NAMPTP43490 491 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 SLC16A1P53985 500 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 ELAVL2Q12926 359 aaKnown RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 MFSD4BQ5TF39 518 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms