RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SND1Q7KZF4 910 aaKnown RBP eCLIP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 POLNQ7Z5Q5 900 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 ANKS1BQ7Z6G8 1248 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 DDX42Q86XP3 938 aaKnown RBP eCLIP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 JAMLQ86YT9 394 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 RCOR2Q8IZ40 523 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 C12orf50Q8NA57 414 aaPredicted RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 C1orf54Q8WWF1 131 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 RXFP2Q8WXD0 754 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 HNRNPABQ99729 332 aaKnown RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 SYT15Q9BQS2 421 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 MED10Q9BTT4 135 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 RAB17Q9H0T7 212 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 ASNSD1Q9NWL6 643 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 DDX56Q9NY93 547 aaKnown RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 OGFRQ9NZT2 677 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 PCYOX1Q9UHG3 505 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 PQBP1O60828 265 aaKnown RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 COILP38432 576 aaPredicted RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 KLF1Q13351 362 aaPredicted RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 CUL1Q13616 776 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 EMBQ6PCB8 327 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 ZDHHC17Q8IUH5 632 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 CCDC105Q8IYK2 499 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 CLEC4CQ8WTT0 213 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 ATG4AQ8WYN0 398 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 UROC1Q96N76 676 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 FTHL17Q9BXU8 183 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 TRIM31Q9BZY9 425 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 DPH5Q9H2P9 285 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 CRTAC1Q9NQ79 661 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 RASAL2Q9UJF2 1139 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 OGDHLQ9ULD0 1010 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 LRRD1A4D1F6 860 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 FAM187AA6NFU0 413 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 BHMG1C9JSJ3 638 aaPredicted RBP14.06□□□□□ -0.16
HMGB1-202ENST00000339872 XPO1O14980 1071 aaKnown RBP14.06□□□□□ -0.16
HMGB1-202ENST00000339872 INPPL1O15357 1258 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 DAPK3O43293 454 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 NBNO60934 754 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 KRT7P08729 469 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 IL1R2P27930 398 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 PLA2G4AP47712 749 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 KCNJ1P48048 391 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 FNTAP49354 379 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 SLC8A3P57103 927 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 SNX1Q13596 522 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 ACAP1Q15027 740 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 CDO1Q16878 200 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 C15orf59Q2T9L4 293 aaPredicted RBP14.06□□□□□ -0.16
HMGB1-202ENST00000339872 KCNT1Q5JUK3 1230 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 CLLU1OSQ5K130 101 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 KAZNQ674X7 775 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 MFSD7Q6UXD7 560 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 RAPGEF5Q92565 580 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 CFAP57Q96MR6 1250 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 CNPY3Q9BT09 278 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 DUSP16Q9BY84 665 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 LRRC19Q9H756 370 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 CHST7Q9NS84 486 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 FAM53CQ9NYF3 392 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 PCSK1NQ9UHG2 260 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 TANC1Q9C0D5 1861 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 KRT10P13645 584 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 NPR3P17342 541 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 MIPP30301 263 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 PTGIRP43119 386 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 ACADSBP45954 432 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 ATN1P54259 1190 aaPredicted RBP14.06□□□□□ -0.16
HMGB1-202ENST00000339872 SH3PXD2AQ5TCZ1 1133 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 SPOCD1Q6ZMY3 1216 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 PAQR9Q6ZVX9 377 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 KRT222Q8N1A0 295 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 URGCPQ8TCY9 931 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 ZBTB9Q96C00 473 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 RUNDC3BQ96NL0 473 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 CYLDQ9NQC7 956 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 KRT82Q9NSB4 513 aa14.06□□□□□ -0.16
HMGB1-202ENST00000339872 F8W810 466 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 ITGB1P05556 798 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 FAM153BP0C7A2 387 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 RPL34P49207 117 aaKnown RBP14.05□□□□□ -0.16
HMGB1-202ENST00000339872 FAM189BP81408 668 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 FAM153CQ494X1 144 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 NOMO2Q5JPE7 1267 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 CD300LGQ6UXG3 332 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 PIGZQ86VD9 579 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 METTL23Q86XA0 190 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 DBF4BQ8NFT6 615 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 SEC14L1Q92503 715 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 CAVIN3Q969G5 261 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 HSFY1Q96LI6 401 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 ERP44Q9BS26 406 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 FAM153AQ9UHL3 310 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 CDH9Q9ULB4 789 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 USP18Q9UMW8 372 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 R3HDM2Q9Y2K5 976 aaKnown RBP14.05□□□□□ -0.16
HMGB1-202ENST00000339872 SCN5AQ14524 2016 aa14.05□□□□□ -0.16
HMGB1-202ENST00000339872 MYBPHLA2RUH7 354 aa14.04□□□□□ -0.16
HMGB1-202ENST00000339872 PITPNM1O00562 1244 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms