RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CALCRLQ16602 461 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 BBS9Q3SYG4 887 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 AARS2Q5JTZ9 985 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TLK2Q86UE8 772 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 EXOC3L1Q86VI1 746 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PNPT1Q8TCS8 783 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 BTF3L4Q96K17 158 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 DCLRE1BQ9H816 532 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SEC14L4Q9UDX3 406 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SPTA1P02549 2419 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SSU72P8A0A1W2PR75 194 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 WDR47O94967 919 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SLC2A3P11169 496 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PRLRP16471 622 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 EIF4A3P38919 411 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 AKR1D1P51857 326 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PRELPP51888 382 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CDK16Q00536 496 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GRSF1Q12849 480 aaKnown RBP eCLIP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 IZUMO3Q5VZ72 239 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 DUS1LQ6P1R4 473 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 OLFML1Q6UWY5 402 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PI16Q6UXB8 463 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF654Q8IZM8 581 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SYN2Q92777 582 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TIFAQ96CG3 184 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 USP44Q9H0E7 712 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RRN3Q9NYV6 651 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SCAF8Q9UPN6 1271 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SPTLC1O15269 473 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 DNAJC6O75061 913 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 AGTP01019 485 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ALOX5P09917 674 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RHOXF2BP0C7M4 288 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CALB2P22676 271 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 AKT1P31749 480 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PSEN1P49768 467 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 JAK3P52333 1124 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ARL4CP56559 192 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RESTQ13127 1097 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TERF2Q15554 542 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TRMT5Q32P41 509 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RUNDC3AQ59EK9 446 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 LRIG3Q6UXM1 1119 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ANKS3Q6ZW76 656 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MINDY2Q8NBR6 621 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 LARP4BQ92615 738 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RHOXF2Q9BQY4 288 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ISCA1Q9BUE6 129 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RAVER2Q9HCJ3 691 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ARL15Q9NXU5 204 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GPRC5DQ9NZD1 345 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NID2Q14112 1375 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 KRIT1O00522 736 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FKBP9O95302 570 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RPN1P04843 607 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 KRT76Q01546 638 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FCHO2Q0JRZ9 810 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MTX1Q13505 466 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CUL4AQ13619 759 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MYBPC2Q14324 1141 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SLC44A4Q53GD3 710 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 LINC00523Q86TU6 105 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ATCAYQ86WG3 371 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RTL3Q8N8U3 475 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 HAVCR2Q8TDQ0 301 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 USP33Q8TEY7 942 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 THAP11Q96EK4 314 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ABHD8Q96I13 439 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PRMT6Q96LA8 375 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 HERC2P3Q9BVR0 1158 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 STRADBQ9C0K7 418 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GANQ9H2C0 597 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RIC8BQ9NVN3 520 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SPATA6Q9NWH7 488 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SFMBT1Q9UHJ3 866 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 COG5Q9UP83 839 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CORO2BQ9UQ03 480 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FAM186AA6NE01 2351 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ASXL3Q9C0F0 2248 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TNS2Q63HR2 1409 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NPIPA7E9PJI5 369 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 UBXN8O00124 270 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RNF113AO15541 343 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 DNAJA2O60884 412 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NPIPA8P0DM63 369 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SFNP31947 248 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GRIK1P39086 918 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ETV6P41212 452 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 VPS41P49754 854 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TIMM10P62072 90 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SGCGQ13326 291 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PAN2Q504Q3 1202 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FAM47AQ5JRC9 791 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PDE12Q6L8Q7 609 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TXNDC11Q6PKC3 985 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 XKRXQ6PP77 449 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MAEAQ7L5Y9 396 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 IFNLR1Q8IU57 520 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 MYCT1Q8N699 235 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms