RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZNHIT6Q9NWK9 470 aaKnown RBP23.44■■□□□ 1.34
SDC3-202ENST00000339394 CLDND1Q9NY35 253 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 BZW2Q9Y6E2 419 aaKnown RBP23.44■■□□□ 1.34
SDC3-202ENST00000339394 PRUNE2Q8WUY3 3088 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 SPDYE4A6NLX3 237 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 LRG1P02750 347 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 SETSIPP0DME0 302 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 SRGAP2BP0DMP2 458 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 C12orf76Q8N812 135 aaPredicted RBP23.44■■□□□ 1.34
SDC3-202ENST00000339394 GIPC2Q8TF65 315 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 PABPC5Q96DU9 382 aaKnown RBP23.44■■□□□ 1.34
SDC3-202ENST00000339394 DZANK1Q9NVP4 752 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 ZDHHC7Q9NXF8 308 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 ARHGAP20Q9P2F6 1191 aa23.44■■□□□ 1.34
SDC3-202ENST00000339394 PLEKP08567 350 aaPredicted RBP23.43■■□□□ 1.34
SDC3-202ENST00000339394 ANXA13P27216 316 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 HOXA9P31269 272 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 DLX2Q07687 328 aaPredicted RBP23.43■■□□□ 1.34
SDC3-202ENST00000339394 TDRD12Q587J7 1177 aaKnown RBP23.43■■□□□ 1.34
SDC3-202ENST00000339394 EP400NLQ6ZTU2 488 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 PIGZQ86VD9 579 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 WDTC1Q8N5D0 677 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 PPM1EQ8WY54 764 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 SPATA17Q96L03 361 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 CLEC1BQ9P126 229 aa23.43■■□□□ 1.34
SDC3-202ENST00000339394 CCDC195A0A1B0GUA6 201 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 HHLA1C9JL84 531 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 XPO1O14980 1071 aaKnown RBP23.42■■□□□ 1.34
SDC3-202ENST00000339394 HNRNPA1P09651 372 aaKnown RBP eCLIP23.42■■□□□ 1.34
SDC3-202ENST00000339394 LTBRP36941 435 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 PLA2G4AP47712 749 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 EPHB3P54753 998 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 PLD1Q13393 1074 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 ANKRD54Q6NXT1 300 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 PMF1Q6P1K2 205 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 STKLD1Q8NE28 680 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 OLIG1Q8TAK6 271 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 CEP295NLQ96MC4 621 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 PCDHB18PQ96TA0 734 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 UBXN6Q9BZV1 441 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 SFXN1Q9H9B4 322 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 PNPLA8Q9NP80 782 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 CYTH4Q9UIA0 394 aa23.42■■□□□ 1.34
SDC3-202ENST00000339394 PLXNA3P51805 1871 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 GOLGA6L6A8MZA4 724 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 TNFRSF10BO14763 440 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 CCL16O15467 120 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 TBX10O75333 385 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 FEZF2Q8TBJ5 459 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 PANX2Q96RD6 677 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 PRKD2Q9BZL6 878 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 CEP83Q9Y592 693 aa23.41■■□□□ 1.34
SDC3-202ENST00000339394 HOXB8P17481 243 aaPredicted RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 TNFAIP3P21580 790 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 CDH5P33151 784 aaPredicted RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 MTMR3Q13615 1198 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 VEPH1Q14D04 833 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 SYCE2Q6PIF2 218 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 TMC5Q6UXY8 1006 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 DENND5BQ6ZUT9 1274 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 GPRIN1Q7Z2K8 1008 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 DNAJB7Q7Z6W7 309 aaPredicted RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 NUP93Q8N1F7 819 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 TMEM35BQ8NCS4 154 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 C1orf131Q8NDD1 294 aaKnown RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 PSMG2Q969U7 264 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 ZNF707Q96C28 371 aaPredicted RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 CHP1Q99653 195 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 SEPT11Q9NVA2 429 aaKnown RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 PAPLNO95428 1278 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 LSM8O95777 96 aaKnown RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 CYP1A1P04798 512 aaPredicted RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 RGS7P49802 495 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 SLC5A3P53794 718 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 CDK17Q00537 523 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 SKIV2LQ15477 1246 aaKnown RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 TRIM72Q6ZMU5 477 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 CCDC186Q7Z3E2 898 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 CMASQ8NFW8 434 aaPredicted RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 SCAMP5Q8TAC9 235 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 STK32AQ8WU08 396 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 ZNF512Q96ME7 567 aaPredicted RBP23.4■■□□□ 1.34
SDC3-202ENST00000339394 APOL5Q9BWW9 433 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 ADAMTS1Q9UHI8 967 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 ASB3Q9Y575 518 aa23.4■■□□□ 1.34
SDC3-202ENST00000339394 SLC38A8A6NNN8 435 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 XYLBO75191 536 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 CSH1P0DML2 217 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 CSH2P0DML3 217 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 UNGP13051 313 aaPredicted RBP23.39■■□□□ 1.33
SDC3-202ENST00000339394 USP46P62068 366 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 NOMO3P69849 1222 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 PDCLQ13371 301 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 RARS2Q5T160 578 aaKnown RBP23.39■■□□□ 1.33
SDC3-202ENST00000339394 ITIH5Q86UX2 942 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 ELMOD1Q8N336 334 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 CPA5Q8WXQ8 436 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 KCTD13Q8WZ19 329 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 HSFY1Q96LI6 401 aa23.39■■□□□ 1.33
SDC3-202ENST00000339394 ST7Q9NRC1 585 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms