RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 ELK3P41970 407 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 SLC45A4Q5BKX6 768 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 OR6B2Q6IFH4 312 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 CLNKQ7Z7G1 428 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 RNF169Q8NCN4 708 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 CCDC110Q8TBZ0 833 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 NSL1Q96IY1 281 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 TMEM120AQ9BXJ8 343 aa11□□□□□ -0.65
COL3A1-202ENST00000317840 TRIM49D1C9J1S8 452 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 PRPF4O43172 522 aaKnown RBP eCLIP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 PLA2G6O60733 806 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ABCD1P33897 745 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 RPL22P35268 128 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 RAP1GAPP47736 663 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 GDF10P55107 478 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ZNF667Q5HYK9 610 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 RNASEH2BQ5TBB1 312 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ASRGL1Q7L266 308 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ARID3BQ8IVW6 561 aaPredicted RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ANKRD13AQ8IZ07 590 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 TRAPPC12Q8WVT3 735 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ALKBH8Q96BT7 664 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 KLRG1Q96E93 195 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ANKRD36BP1Q96IX9 119 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 HEXIM2Q96MH2 286 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 TSC22D3Q99576 134 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ADPGKQ9BRR6 497 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ARHGAP28Q9P2N2 729 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 SLX4Q8IY92 1834 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 CDK5RAP2Q96SN8 1893 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 B2RBV5 119 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 MAFGO15525 162 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 PRPSAP2O60256 369 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 TOM1L1O75674 476 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ZBED1O96006 694 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 LMNAP02545 664 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 SARNPP82979 210 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ROR1Q01973 937 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 CCDC15Q0P6D6 951 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 PARP6Q2NL67 630 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 KBTBD12Q3ZCT8 623 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 FNBP1LQ5T0N5 605 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 OPTNQ96CV9 577 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ACAP3Q96P50 834 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 SCOCQ9UIL1 159 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 PDE4DIPQ5VU43 2346 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 M0QYV0 167 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 OATP04181 439 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 CDH8P55286 799 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 POLE2P56282 527 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 YWHAEP62258 255 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 TAP1Q03518 808 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 FAAP100Q0VG06 881 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 THOC5Q13769 683 aaKnown RBP10.99□□□□□ -0.65
COL3A1-202ENST00000317840 SGSM1Q2NKQ1 1148 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 ZNF568Q3ZCX4 644 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 MAB21L3Q8N8X9 362 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 TUBB6Q9BUF5 446 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 PPCSQ9HAB8 311 aa10.99□□□□□ -0.65
COL3A1-202ENST00000317840 KBTBD13C9JR72 458 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 KCNN4O15554 427 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 ACO1P21399 889 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 NAMPTP43490 491 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 HIRAP54198 1017 aaPredicted RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 OGDHQ02218 1023 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 KPNB1Q14974 876 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 SNX30Q5VWJ9 437 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 UNC45BQ8IWX7 931 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 CCDC33Q8N5R6 958 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 COPS5Q92905 334 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 UTP4Q969X6 686 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 MRPL4Q9BYD3 311 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 DRG1Q9Y295 367 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 SBF2Q86WG5 1849 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 C2CD2LO14523 706 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 MAP3K7O43318 606 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 MED7O43513 233 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 PEX11AO75192 247 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 AVILO75366 819 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 ITGAVP06756 1048 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 CD48P09326 243 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 SUPT20HL2P0C7V6 817 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 TPBGLP0DKB5 382 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 CDKN2BP42772 138 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 ALDH18A1P54886 795 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 NUDCD3Q8IVD9 361 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 HIPK4Q8NE63 616 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 JOSD2Q8TAC2 188 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 LRRN4Q8WUT4 740 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 C10orf82Q8WW14 230 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 PRPF31Q8WWY3 499 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 NLRP7Q8WX94 980 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 CPT1BQ92523 772 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 ARL8BQ9NVJ2 186 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 ZC3H7BQ9UGR2 993 aaKnown RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 GRID1Q9ULK0 1009 aa10.98□□□□□ -0.65
COL3A1-202ENST00000317840 TCF7P36402 384 aaPredicted RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 CCNHP51946 323 aaPredicted RBP10.98□□□□□ -0.65
COL3A1-202ENST00000317840 BMPR2Q13873 1038 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms