RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CD44P16070 742 aaKnown RBP17.34■□□□□ 0.37
LSM1-201ENST00000311351 MXI1P50539 228 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 KPNA1P52294 538 aaPredicted RBP17.34■□□□□ 0.37
LSM1-201ENST00000311351 ENPEPQ07075 957 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 IFRD2Q12894 506 aaPredicted RBP17.34■□□□□ 0.37
LSM1-201ENST00000311351 FZD5Q13467 585 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 DCAF17Q5H9S7 520 aaPredicted RBP17.34■□□□□ 0.37
LSM1-201ENST00000311351 PAQR9Q6ZVX9 377 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 FRMD5Q7Z6J6 570 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 ZC3H3Q8IXZ2 948 aaKnown RBP17.34■□□□□ 0.37
LSM1-201ENST00000311351 FANCMQ8IYD8 2048 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 ZNF687Q8N1G0 1237 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 TTC16Q8NEE8 873 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 FAM3CQ92520 227 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 SEMA4DQ92854 862 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 TNIP3Q96KP6 325 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 TWNKQ96RR1 684 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 CYP2S1Q96SQ9 504 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 TTLL2Q9BWV7 592 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 IMPG2Q9BZV3 1241 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 NIF3L1Q9GZT8 377 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 KRT82Q9NSB4 513 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 FAM49BQ9NUQ9 324 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 TDP1Q9NUW8 608 aa17.34■□□□□ 0.37
LSM1-201ENST00000311351 MRPS17Q9Y2R5 130 aaKnown RBP17.34■□□□□ 0.37
LSM1-201ENST00000311351 TRAV19A0A0A6YYK7 116 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 BIN1O00499 593 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 MAN2B1O00754 1011 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 SLC16A3O15427 465 aaKnown RBP17.33■□□□□ 0.36
LSM1-201ENST00000311351 CCNE1P24864 410 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 USP4Q13107 963 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 TCERG1LQ5VWI1 586 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 KRT39Q6A163 491 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 TRIM68Q6AZZ1 485 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 TXNDC11Q6PKC3 985 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 C1orf210Q8IVY1 113 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 FUKQ8N0W3 1084 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 ARL14EPQ8N8R7 260 aaPredicted RBP17.33■□□□□ 0.36
LSM1-201ENST00000311351 CLDN23Q96B33 292 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 CEP295NLQ96MC4 621 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 KCNK16Q96T55 309 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 KIF9Q9HAQ2 790 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 SPATA6Q9NWH7 488 aaPredicted RBP17.33■□□□□ 0.36
LSM1-201ENST00000311351 CHMP5Q9NZZ3 219 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 GCNT4Q9P109 453 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 USP34Q70CQ2 3546 aa17.33■□□□□ 0.36
LSM1-201ENST00000311351 DMDP11532 3685 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 SPECC1L-ADORA2AF8WAN1 911 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 CD58P19256 250 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 BMP6P22004 513 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 KCNA4P22459 653 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 GTF2H1P32780 548 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 CTHP32929 405 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 NBL1P41271 181 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 MCCD1P59942 119 aaPredicted RBP17.32■□□□□ 0.36
LSM1-201ENST00000311351 PLCB2Q00722 1185 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 LRRC63Q05C16 580 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 INCA1Q0VD86 236 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 ZNF268Q14587 947 aaPredicted RBP17.32■□□□□ 0.36
LSM1-201ENST00000311351 CBWD6Q4V339 395 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 CBWD3Q5JTY5 395 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 CBWD5Q5RIA9 395 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 KLHL10Q6JEL2 608 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 UNC93AQ86WB7 457 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 ELOA2Q8IYF1 753 aaPredicted RBP17.32■□□□□ 0.36
LSM1-201ENST00000311351 MAML2Q8IZL2 1156 aaPredicted RBP17.32■□□□□ 0.36
LSM1-201ENST00000311351 C12orf29Q8N999 325 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 SLC2A14Q8TDB8 520 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 SMARCD1Q96GM5 515 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 NELL2Q99435 816 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 DMAP1Q9NPF5 467 aaPredicted RBP17.32■□□□□ 0.36
LSM1-201ENST00000311351 HPS4Q9NQG7 708 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 GKN1Q9NS71 199 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 THG1LQ9NWX6 298 aaKnown RBP17.32■□□□□ 0.36
LSM1-201ENST00000311351 TRPM5Q9NZQ8 1165 aa17.32■□□□□ 0.36
LSM1-201ENST00000311351 SOBPA7XYQ1 873 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 PSMA7O14818 248 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 AP1G2O75843 785 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 USP17L7P0C7H9 530 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 ARSAP15289 507 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 ADORA2BP29275 332 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 FKBP3Q00688 224 aaKnown RBP17.31■□□□□ 0.36
LSM1-201ENST00000311351 TAF10Q12962 218 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 STIM1Q13586 685 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 MTF1Q14872 753 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 ZNF77Q15935 545 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 WDR44Q5JSH3 913 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 ARID3AQ99856 593 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 FAM83CQ9BQN1 747 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 GTPBP4Q9BZE4 634 aaKnown RBP17.31■□□□□ 0.36
LSM1-201ENST00000311351 EBF3Q9H4W6 596 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 C8orf33Q9H7E9 229 aaPredicted RBP17.31■□□□□ 0.36
LSM1-201ENST00000311351 CTNND2Q9UQB3 1225 aa17.31■□□□□ 0.36
LSM1-201ENST00000311351 RIF1Q5UIP0 2472 aaKnown RBP17.3■□□□□ 0.36
LSM1-201ENST00000311351 ZNF840PA6NDX5 716 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 NCAM2O15394 837 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 LAMTOR5O43504 91 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 BEST1O76090 585 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 ABL1P00519 1130 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 SP9P0CG40 484 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms