RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 KRT73Q86Y46 540 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 USP13Q92995 863 aaPredicted RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 USP7Q93009 1102 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 LRRC39Q96DD0 335 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 TRIT1Q9H3H1 467 aaKnown RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 MTO1Q9Y2Z2 717 aaKnown RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 NR5A2O00482 541 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 TGM2P21980 687 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 AGAP9Q5VTM2 703 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 BRINP3Q76B58 766 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 AP4S1Q9Y587 144 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 DPF3Q92784 378 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 CNOT7Q9UIV1 285 aaKnown RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 CCDC189A1A4V9 331 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 FAM220BPB1ANY3 271 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 MBL2P11226 248 aaPredicted RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 IFNAR1P17181 557 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 SLC11A2P49281 568 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 ARMC3Q5W041 872 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 ULK3Q6PHR2 472 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PRR23CQ6ZRP0 262 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 UBA3Q8TBC4 463 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 BTBD9Q96Q07 612 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 POLR1BQ9H9Y6 1135 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PCSK1P29120 753 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PLEKHA7Q6IQ23 1121 aa11.78□□□□□ -0.52
PTPN4-201ENST00000263708 RUVBL2Q9Y230 463 aaKnown RBP11.78□□□□□ -0.52
PTPN4-201ENST00000263708 PEG3Q9GZU2 1588 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 FNTAP49354 379 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 CDC42EP1Q00587 391 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 BYSLQ13895 437 aaKnown RBP11.77□□□□□ -0.52
PTPN4-201ENST00000263708 PLA2G4FQ68DD2 849 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 RIN2Q8WYP3 895 aaPredicted RBP11.77□□□□□ -0.52
PTPN4-201ENST00000263708 MANSC1Q9H8J5 431 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 LOC100653049A0A140TA62 436 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 KRT34O76011 436 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 CCT8P50990 548 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 HMGCS2P54868 508 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 ORC2Q13416 577 aaPredicted RBP11.77□□□□□ -0.52
PTPN4-201ENST00000263708 TXNRD1Q16881 649 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 ATAD3BQ5T9A4 648 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 KRT74Q7RTS7 529 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 SLC13A5Q86YT5 568 aaPredicted RBP11.77□□□□□ -0.52
PTPN4-201ENST00000263708 RAD21L1Q9H4I0 556 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 FAM153AQ9UHL3 310 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 B2RBV5 119 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 PHF2O75151 1096 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 ODC1P11926 461 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 CHRNB3Q05901 458 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF284Q2VY69 593 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 KIF2BQ8N4N8 673 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 MFSD1Q9H3U5 465 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 SNX6Q9UNH7 406 aa11.77□□□□□ -0.52
PTPN4-201ENST00000263708 ACSL4O60488 711 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 EPS8L2Q9H6S3 715 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 BSDC1Q9NW68 430 aaPredicted RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 USP15Q9Y4E8 981 aaPredicted RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PCDHA10Q9Y5I2 948 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 NEDD4P46934 1319 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 TRPM8Q7Z2W7 1104 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PROSER1Q86XN7 944 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PRKD2Q9BZL6 878 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 ZFYVE28Q9HCC9 887 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 ING3Q9NXR8 418 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 KLHL3Q9UH77 587 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 OR6B1O95007 311 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PRKAA1Q13131 559 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PROSER3Q2NL68 480 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 FBXO42Q6P3S6 717 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PALB2Q86YC2 1186 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 ERP27Q96DN0 273 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 YME1L1Q96TA2 773 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 WDR41Q9HAD4 459 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 RBMXL2O75526 392 aaKnown RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PTPN1P18031 435 aaKnown RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 NRG3P56975 720 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 TSNQ15631 228 aaKnown RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 PFKFB3Q16875 520 aaPredicted RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 AGGF1Q8N302 714 aaeCLIP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 SCAIQ8N9R8 606 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 METTL5Q9NRN9 209 aaKnown RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 KIAA0232Q92628 1395 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 F5H5T6 163 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 FAM200BP0CF97 657 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 SERPINH1P50454 418 aaKnown RBP11.77□□□□□ -0.53
PTPN4-201ENST00000263708 ATP6V0D2Q8N8Y2 350 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 NT5C1AQ9BXI3 368 aa11.77□□□□□ -0.53
PTPN4-201ENST00000263708 DYNC1LI2O43237 492 aaPredicted RBP11.76□□□□□ -0.53
PTPN4-201ENST00000263708 IFNA14P01570 189 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 PTGER2P43116 358 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 COPAP53621 1224 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 MYO1HQ8N1T3 1032 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 CCDC185Q8N715 623 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 FAM71DQ8N9W8 422 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 WDCPQ9H6R7 721 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 ACADSBP45954 432 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 DNAJC9Q8WXX5 260 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 VAV1P15498 845 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 HSPA13P48723 471 aa11.76□□□□□ -0.53
PTPN4-201ENST00000263708 CLK2P49760 499 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms