RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 BSPRYQ5W0U4 402 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 PPIL6Q8IXY8 311 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 RTKN2Q8IZC4 609 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 VPS52Q8N1B4 723 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 ATP11CQ8NB49 1132 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 ZNF280CQ8ND82 737 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 GRAMD1AQ96CP6 724 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 CLPTM1LQ96KA5 538 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 ACAP3Q96P50 834 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 TSSK1BQ9BXA7 367 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 TMEM120AQ9BXJ8 343 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 PPP1R12CQ9BZL4 782 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 SHCBP1LQ9BZQ2 653 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 NIF3L1Q9GZT8 377 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 LRMDAQ9H2I8 198 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 RNPEPL1Q9HAU8 725 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 PCDH9Q9HC56 1237 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 RAB6BQ9NRW1 208 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 SLC17A6Q9P2U8 582 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 TCRBV9S1A1TA0A576 114 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 CXorf49A8MYA2 514 aaPredicted RBP9.55□□□□□ -0.88
MSH4-201ENST00000263187 M0QYV0 167 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 PRPF4O43172 522 aaKnown RBP eCLIP9.55□□□□□ -0.88
MSH4-201ENST00000263187 ABHD2P08910 425 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 TPBGLP0DKB5 382 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 TROVE2P10155 538 aaKnown RBP eCLIP9.55□□□□□ -0.88
MSH4-201ENST00000263187 UBA1P22314 1058 aaKnown RBP9.55□□□□□ -0.88
MSH4-201ENST00000263187 NAMPTP43490 491 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 STAT5BP51692 787 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 CLCN3P51790 818 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 ARFIP2P53365 341 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 CLDN10P78369 228 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 KDSRQ06136 332 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 SGSM1Q2NKQ1 1148 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 SLFN12LQ6IEE8 588 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 CAPRIN2Q6IMN6 1127 aaKnown RBP9.55□□□□□ -0.88
MSH4-201ENST00000263187 NCAPG2Q86XI2 1143 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 SLC25A41Q8N5S1 370 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 C12orf29Q8N999 325 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 FAF2Q96CS3 445 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 FAXDC2Q96IV6 333 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 PGLYRP2Q96PD5 576 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 PCYT2Q99447 389 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 LPIN3Q9BQK8 851 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 CADM1Q9BY67 442 aaKnown RBP9.55□□□□□ -0.88
MSH4-201ENST00000263187 ACAD9Q9H845 621 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 SPON1Q9HCB6 807 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 MAGED2Q9UNF1 606 aaPredicted RBP9.55□□□□□ -0.88
MSH4-201ENST00000263187 GINS2Q9Y248 185 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 MAD1L1Q9Y6D9 718 aa9.55□□□□□ -0.88
MSH4-201ENST00000263187 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.55□□□□□ -0.88
MSH4-201ENST00000263187 ZNF646O15015 1829 aaPredicted RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 C3orf70A6NLC5 250 aaPredicted RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 SPATA31C2B4DYI2 1134 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 GYG2O15488 501 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 MAP3K13O43283 966 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 ITGAVP06756 1048 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 APRTP07741 180 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 INHBAP08476 426 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 MYL2P10916 166 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 CALB2P22676 271 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 ARL2P36404 184 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 RCN1Q15293 331 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 STXBP2Q15833 593 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 MUM1Q2TAK8 710 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 RINLQ6ZS11 566 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 ARMC2Q8NEN0 867 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 SLC35B2Q8TB61 432 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 WDR60Q8WVS4 1066 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 COPS5Q92905 334 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 MCUR1Q96AQ8 359 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 VCPIP1Q96JH7 1222 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 HEXIM2Q96MH2 286 aaKnown RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 DHX33Q9H6R0 707 aaKnown RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 IL1RAPL1Q9NZN1 696 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 ACTL7BQ9Y614 415 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 KCNN4O15554 427 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 ADCY3O60266 1144 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 HAUS5O94927 633 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 PRKCBP05771 671 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 ENO1P06733 434 aaKnown RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 PTPRAP18433 802 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 KCNA3P22001 575 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 PHBP35232 272 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 GMPSP49915 693 aaPredicted RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 CRADDP78560 199 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 SLC25A11Q02978 314 aaKnown RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 ACVR2BQ13705 512 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 DPYSL3Q14195 570 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 PIGHQ14442 188 aaPredicted RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 ZC3H12AQ5D1E8 599 aaKnown RBP9.54□□□□□ -0.88
MSH4-201ENST00000263187 MROH9Q5TGP6 573 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 UNC5BQ8IZJ1 945 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 NAT8LQ8N9F0 302 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 SHKBP1Q8TBC3 707 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 STK32AQ8WU08 396 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 DCAKDQ8WVC6 231 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 UCMAQ8WVF2 138 aa9.54□□□□□ -0.88
MSH4-201ENST00000263187 PEBP4Q96S96 227 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms