RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W RDS3Q06835 107 aaPredicted RBP4.5□□□□□ -1.69
CAF40YNL288W ZEO1Q08245 113 aa4.5□□□□□ -1.69
CAF40YNL288W VAM10Q08474 114 aa4.5□□□□□ -1.69
CAF40YNL288W CSM4Q08955 156 aa4.5□□□□□ -1.69
CAF40YNL288W SNU23Q12368 194 aaPredicted RBP4.5□□□□□ -1.69
CAF40YNL288W Q0255P03881 472 aa4.49□□□□□ -1.69
CAF40YNL288W PAU7P39545 55 aa4.49□□□□□ -1.69
CAF40YNL288W IRC22P40006 225 aa4.49□□□□□ -1.69
CAF40YNL288W PAU5P43575 122 aa4.49□□□□□ -1.69
CAF40YNL288W DAN1P47178 298 aa4.49□□□□□ -1.69
CAF40YNL288W BRP1P53194 125 aa4.49□□□□□ -1.69
CAF40YNL288W DIA1P54005 336 aa4.49□□□□□ -1.69
CAF40YNL288W YBR200W-AQ3E755 54 aa4.49□□□□□ -1.69
CAF40YNL288W CUP2P15315 225 aa4.48□□□□□ -1.69
CAF40YNL288W YCR001WP25347 104 aa4.48□□□□□ -1.69
CAF40YNL288W RPL16BP26785 198 aaKnown RBP4.48□□□□□ -1.69
CAF40YNL288W YPS5P53057 165 aa4.48□□□□□ -1.69
CAF40YNL288W AIM34Q03673 198 aa4.48□□□□□ -1.69
CAF40YNL288W YNR034W-AQ3E841 98 aa4.48□□□□□ -1.69
CAF40YNL288W RPL27AP0C2H6 136 aaKnown RBP4.47□□□□□ -1.69
CAF40YNL288W YHR140WP38842 239 aa4.47□□□□□ -1.69
CAF40YNL288W THG1P53215 237 aaKnown RBP4.47□□□□□ -1.69
CAF40YNL288W HAL1Q01766 294 aa4.47□□□□□ -1.69
CAF40YNL288W GPI19Q04082 140 aa4.47□□□□□ -1.69
CAF40YNL288W GTO3Q04806 366 aa4.47□□□□□ -1.69
CAF40YNL288W ARC18Q05933 178 aaKnown RBP4.47□□□□□ -1.69
CAF40YNL288W POM33Q12164 279 aa4.47□□□□□ -1.69
CAF40YNL288W ERG27Q12452 347 aaKnown RBP4.47□□□□□ -1.69
CAF40YNL288W ZRT1P32804 376 aa4.46□□□□□ -1.7
CAF40YNL288W DAD2P36162 133 aa4.46□□□□□ -1.7
CAF40YNL288W SDH8P38345 138 aa4.46□□□□□ -1.7
CAF40YNL288W RRT13P40042 185 aa4.46□□□□□ -1.7
CAF40YNL288W YGR017WP53210 297 aa4.46□□□□□ -1.7
CAF40YNL288W YER175W-AQ8TGU4 54 aa4.46□□□□□ -1.7
CAF40YNL288W PAM17P36147 197 aa4.45□□□□□ -1.7
CAF40YNL288W SUR2P38992 349 aa4.45□□□□□ -1.7
CAF40YNL288W YGR240C-AQ3E786 66 aa4.45□□□□□ -1.7
CAF40YNL288W PAU19P0CE85 124 aa4.44□□□□□ -1.7
CAF40YNL288W PAU21P0CE86 164 aa4.44□□□□□ -1.7
CAF40YNL288W PAU22P0CE87 164 aa4.44□□□□□ -1.7
CAF40YNL288W PAU3P25610 124 aa4.44□□□□□ -1.7
CAF40YNL288W MRPL28P36527 147 aa4.44□□□□□ -1.7
CAF40YNL288W GTT1P40582 234 aa4.44□□□□□ -1.7
CAF40YNL288W NSE4P43124 402 aa4.44□□□□□ -1.7
CAF40YNL288W RPS22BQ3E7Y3 130 aaKnown RBP4.44□□□□□ -1.7
CAF40YNL288W SDS23P53172 527 aa4.43□□□□□ -1.7
CAF40YNL288W DXO1Q06349 442 aa4.43□□□□□ -1.7
CAF40YNL288W YLR042CQ07990 161 aa4.43□□□□□ -1.7
CAF40YNL288W MDN1Q12019 4910 aaKnown RBP4.42□□□□□ -1.7
CAF40YNL288W RPL42AP0CX27 106 aaKnown RBP4.42□□□□□ -1.7
CAF40YNL288W RPL42BP0CX28 106 aaKnown RBP4.42□□□□□ -1.7
CAF40YNL288W YCR023CP25351 611 aa4.42□□□□□ -1.7
CAF40YNL288W YBR013CP38215 129 aa4.42□□□□□ -1.7
CAF40YNL288W TEM1P38987 245 aa4.42□□□□□ -1.7
CAF40YNL288W KRE9P39005 276 aa4.42□□□□□ -1.7
CAF40YNL288W YNL217WP40152 326 aa4.42□□□□□ -1.7
CAF40YNL288W TVP18Q04767 167 aa4.42□□□□□ -1.7
CAF40YNL288W RPL23AP0CX41 137 aaKnown RBP4.41□□□□□ -1.7
CAF40YNL288W RPL23BP0CX42 137 aaKnown RBP4.41□□□□□ -1.7
CAF40YNL288W YGR149WP48236 432 aa4.41□□□□□ -1.7
CAF40YNL288W YML108WQ03759 105 aa4.4□□□□□ -1.71
CAF40YNL288W DGA1Q08650 418 aa4.4□□□□□ -1.71
CAF40YNL288W FSF1Q12029 327 aaKnown RBP4.4□□□□□ -1.71
CAF40YNL288W CRC1Q12289 327 aa4.4□□□□□ -1.71
CAF40YNL288W POR1P04840 283 aaKnown RBP4.39□□□□□ -1.71
CAF40YNL288W KTI12P34253 313 aaKnown RBP4.39□□□□□ -1.71
CAF40YNL288W SPC1P46965 94 aa4.39□□□□□ -1.71
CAF40YNL288W WIP1Q2V2P8 89 aa4.39□□□□□ -1.71
CAF40YNL288W YCR024C-BQ3E7Z8 88 aa4.39□□□□□ -1.71
CAF40YNL288W SEC4P07560 215 aaKnown RBP4.38□□□□□ -1.71
CAF40YNL288W YKR032WP36127 104 aa4.38□□□□□ -1.71
CAF40YNL288W RPR2P40571 144 aa4.38□□□□□ -1.71
CAF40YNL288W ERI1P62651 68 aaKnown RBP4.38□□□□□ -1.71
CAF40YNL288W PMP3P87284 55 aa4.38□□□□□ -1.71
CAF40YNL288W UBC5P15732 148 aa4.37□□□□□ -1.71
CAF40YNL288W SEC72P39742 193 aaKnown RBP4.37□□□□□ -1.71
CAF40YNL288W CDC40P40968 455 aaPredicted RBP4.37□□□□□ -1.71
CAF40YNL288W DCV1P43595 202 aa4.37□□□□□ -1.71
CAF40YNL288W SAL1D6W196 494 aa4.36□□□□□ -1.71
CAF40YNL288W PET8P38921 284 aa4.36□□□□□ -1.71
CAF40YNL288W YER076CP40049 302 aa4.36□□□□□ -1.71
CAF40YNL288W YGL118CP53132 145 aa4.36□□□□□ -1.71
CAF40YNL288W CYT2Q00873 224 aa4.36□□□□□ -1.71
CAF40YNL288W PFY1P07274 126 aa4.35□□□□□ -1.71
CAF40YNL288W MRP49P32388 137 aa4.35□□□□□ -1.71
CAF40YNL288W MGR2Q02889 113 aa4.35□□□□□ -1.71
CAF40YNL288W YMR122W-AQ3E842 84 aa4.35□□□□□ -1.71
CAF40YNL288W YPR010C-AA5Z2X5 72 aa4.34□□□□□ -1.71
CAF40YNL288W YKR070WP36151 352 aaKnown RBP4.34□□□□□ -1.71
CAF40YNL288W TIM11P81449 96 aaPredicted RBP4.34□□□□□ -1.71
CAF40YNL288W DPP1Q05521 289 aa4.34□□□□□ -1.71
CAF40YNL288W ARC15P40518 154 aaRIP-Chip data4.33□□□□□ -1.72not detected
CAF40YNL288W TOS6P48560 102 aa4.33□□□□□ -1.72
CAF40YNL288W YJL028WP47062 111 aa4.32□□□□□ -1.72
CAF40YNL288W YIL014C-AQ02598 104 aa4.32□□□□□ -1.72
CAF40YNL288W ARL3Q02804 198 aa4.32□□□□□ -1.72
CAF40YNL288W FCF1Q05498 189 aaPredicted RBP4.32□□□□□ -1.72
CAF40YNL288W YPR014CQ6B0W2 109 aa4.32□□□□□ -1.72
CAF40YNL288W RTC6O14464 93 aa4.31□□□□□ -1.72
CAF40YNL288W RPL33AP05744 107 aaKnown RBP4.31□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 26.3 ms