RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	ERV15	P38312	142 aa		0.5	□□□□□ -2.33
UBP3	YER151C	RPL14B	P38754	138 aa	Known RBP	0.5	□□□□□ -2.33
UBP3	YER151C	PET8	P38921	284 aa		0.5	□□□□□ -2.33
UBP3	YER151C	PEX22	P39718	180 aa		0.5	□□□□□ -2.33
UBP3	YER151C	SPC25	P40014	221 aa		0.5	□□□□□ -2.33
UBP3	YER151C	AIF1	P52923	378 aa		0.5	□□□□□ -2.33
UBP3	YER151C	YGR026W	P53217	278 aa		0.5	□□□□□ -2.33
UBP3	YER151C	MRPS17	Q03246	237 aa	Predicted RBP	0.5	□□□□□ -2.33
UBP3	YER151C	YML018C	Q03730	393 aa		0.5	□□□□□ -2.33
UBP3	YER151C	RAV2	Q03956	351 aa		0.5	□□□□□ -2.33
UBP3	YER151C	TVP18	Q04767	167 aa		0.5	□□□□□ -2.33
UBP3	YER151C	YLR031W	Q07978	186 aa		0.5	□□□□□ -2.33
UBP3	YER151C	YOL131W	Q08270	108 aa		0.5	□□□□□ -2.33
UBP3	YER151C	YLR236C	A0A023PZG4	107 aa		0.49	□□□□□ -2.33
UBP3	YER151C	POF1	P25576	258 aa		0.49	□□□□□ -2.33
UBP3	YER151C	YBR032W	P38223	100 aa		0.49	□□□□□ -2.33
UBP3	YER151C	SMX2	P40204	77 aa	Known RBP	0.49	□□□□□ -2.33
UBP3	YER151C	PEP8	P40335	379 aa		0.49	□□□□□ -2.33
UBP3	YER151C	USE1	P53146	245 aa		0.49	□□□□□ -2.33
UBP3	YER151C	YHR213W-A	Q8TGT4	77 aa		0.49	□□□□□ -2.33
UBP3	YER151C	YLL053C	P0CD98	152 aa		0.49	□□□□□ -2.33
UBP3	YER151C	NHP6B	P11633	99 aa	Known RBP	0.49	□□□□□ -2.33
UBP3	YER151C	UBC4	P15731	148 aa		0.49	□□□□□ -2.33
UBP3	YER151C	AST1	P35183	429 aa		0.49	□□□□□ -2.33
UBP3	YER151C	YHR173C	P38864	112 aa		0.49	□□□□□ -2.33
UBP3	YER151C	PEX17	P40155	199 aa		0.49	□□□□□ -2.33
UBP3	YER151C	HUA1	P40325	198 aa		0.49	□□□□□ -2.33
UBP3	YER151C	YJR056C	P47115	236 aa		0.49	□□□□□ -2.33
UBP3	YER151C	ERV25	P54837	211 aa	Known RBP	0.49	□□□□□ -2.33
UBP3	YER151C	UBC7	Q02159	165 aa		0.49	□□□□□ -2.33
UBP3	YER151C	SMD1	Q02260	146 aa	Predicted RBP	0.49	□□□□□ -2.33
UBP3	YER151C	VPS28	Q02767	242 aa		0.49	□□□□□ -2.33
UBP3	YER151C	YGL194C-A	Q2V2P6	80 aa		0.49	□□□□□ -2.33
UBP3	YER151C	ISD11	Q6Q560	94 aa		0.49	□□□□□ -2.33
UBP3	YER151C	MED11	Q99278	115 aa		0.49	□□□□□ -2.33
UBP3	YER151C	MAG1	P22134	296 aa	Known RBP	0.48	□□□□□ -2.33
UBP3	YER151C	FYV4	P38783	130 aa	Predicted RBP	0.48	□□□□□ -2.33
UBP3	YER151C	SUR2	P38992	349 aa		0.48	□□□□□ -2.33
UBP3	YER151C	SEC72	P39742	193 aa	Known RBP	0.48	□□□□□ -2.33
UBP3	YER151C	SNU13	P39990	126 aa	Known RBP	0.48	□□□□□ -2.33
UBP3	YER151C	CPD1	P53314	239 aa		0.48	□□□□□ -2.33
UBP3	YER151C	MGR2	Q02889	113 aa		0.48	□□□□□ -2.33
UBP3	YER151C	LIP1	Q03579	150 aa		0.48	□□□□□ -2.33
UBP3	YER151C	INP1	Q03694	420 aa		0.48	□□□□□ -2.33
UBP3	YER151C	VPS20	Q04272	221 aa		0.48	□□□□□ -2.33
UBP3	YER151C	YPR013C	Q12145	317 aa		0.48	□□□□□ -2.33
UBP3	YER151C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.48	□□□□□ -2.33
UBP3	YER151C	BEM2	P39960	2167 aa	Known RBP	0.48	□□□□□ -2.33
UBP3	YER151C	AIM29	P36154	155 aa		0.48	□□□□□ -2.33
UBP3	YER151C	YIA6	P40556	373 aa		0.48	□□□□□ -2.33
UBP3	YER151C	SER2	P42941	309 aa		0.48	□□□□□ -2.33
UBP3	YER151C	YJL144W	P47009	104 aa		0.48	□□□□□ -2.33
UBP3	YER151C	TMA22	P47089	198 aa	Predicted RBP	0.48	□□□□□ -2.33
UBP3	YER151C	MMS2	P53152	137 aa		0.48	□□□□□ -2.33
UBP3	YER151C	POM33	Q12164	279 aa		0.48	□□□□□ -2.33
UBP3	YER151C	YNL042W-B	Q3E7Z2	85 aa		0.48	□□□□□ -2.33
UBP3	YER151C	TAR1	Q8TGM6	124 aa		0.48	□□□□□ -2.33
UBP3	YER151C	UTP20	P35194	2493 aa	Known RBP	0.47	□□□□□ -2.33
UBP3	YER151C	RPL39	P04650	51 aa		0.47	□□□□□ -2.33
UBP3	YER151C	PFY1	P07274	126 aa		0.47	□□□□□ -2.33
UBP3	YER151C	HSP12	P22943	109 aa	Known RBP	0.47	□□□□□ -2.33
UBP3	YER151C	LDS1	P31379	325 aa		0.47	□□□□□ -2.33
UBP3	YER151C	APS1	P35181	156 aa		0.47	□□□□□ -2.33
UBP3	YER151C	COS8	P38723	381 aa		0.47	□□□□□ -2.33
UBP3	YER151C	RIB4	P50861	169 aa	Predicted RBP	0.47	□□□□□ -2.33
UBP3	YER151C	DXO1	Q06349	442 aa		0.47	□□□□□ -2.33
UBP3	YER151C	CNB1	P25296	175 aa		0.47	□□□□□ -2.33
UBP3	YER151C	AHT1	P29589	182 aa		0.47	□□□□□ -2.33
UBP3	YER151C	ARC15	P40518	154 aa	RIP-Chip data	0.47	□□□□□ -2.33	not detected
UBP3	YER151C	YIL059C	P40520	121 aa		0.47	□□□□□ -2.33
UBP3	YER151C	MPC3	P53311	146 aa		0.47	□□□□□ -2.33
UBP3	YER151C	CUE4	Q04201	117 aa	Predicted RBP	0.47	□□□□□ -2.33
UBP3	YER151C	SPC24	Q04477	213 aa		0.47	□□□□□ -2.33
UBP3	YER151C	DTD1	Q07648	150 aa	Known RBP	0.47	□□□□□ -2.33
UBP3	YER151C	PEX27	Q08580	376 aa		0.47	□□□□□ -2.33
UBP3	YER151C	YOR283W	Q12040	230 aa	Known RBP	0.47	□□□□□ -2.33
UBP3	YER151C	SFT2	P38166	215 aa		0.46	□□□□□ -2.34
UBP3	YER151C	YEA6	P39953	335 aa		0.46	□□□□□ -2.34
UBP3	YER151C	PCL7	P40186	285 aa		0.46	□□□□□ -2.34
UBP3	YER151C	YGL230C	P53074	147 aa		0.46	□□□□□ -2.34
UBP3	YER151C	YCL001W-A	P87012	153 aa		0.46	□□□□□ -2.34
UBP3	YER151C	GPI19	Q04082	140 aa		0.46	□□□□□ -2.34
UBP3	YER151C	YDR010C	Q12426	110 aa		0.46	□□□□□ -2.34
UBP3	YER151C	YBR200W-A	Q3E755	54 aa		0.46	□□□□□ -2.34
UBP3	YER151C	ODC2	Q99297	307 aa		0.46	□□□□□ -2.34
UBP3	YER151C	KRE1	P17260	313 aa		0.46	□□□□□ -2.34
UBP3	YER151C	SCM4	P32564	187 aa		0.46	□□□□□ -2.34
UBP3	YER151C	YBR090C	P38253	122 aa		0.46	□□□□□ -2.34
UBP3	YER151C	YER085C	P40058	173 aa		0.46	□□□□□ -2.34
UBP3	YER151C	GPI14	P47088	403 aa	Known RBP	0.46	□□□□□ -2.34
UBP3	YER151C	RPL37A	P49166	88 aa	Known RBP	0.46	□□□□□ -2.34
UBP3	YER151C	MRPL50	P53724	139 aa		0.46	□□□□□ -2.34
UBP3	YER151C	FMP27	Q06179	2628 aa		0.46	□□□□□ -2.34
UBP3	YER151C	ADH3	P07246	375 aa	Known RBP	0.45	□□□□□ -2.34
UBP3	YER151C	YLR156W	P0CE96	114 aa		0.45	□□□□□ -2.34
UBP3	YER151C	YLR159W	P0CE97	114 aa		0.45	□□□□□ -2.34
UBP3	YER151C	YLR161W	P0CE98	114 aa		0.45	□□□□□ -2.34
UBP3	YER151C	YLR157W-D	P0CE99	70 aa		0.45	□□□□□ -2.34
UBP3	YER151C	GSP2	P32836	220 aa	Known RBP	0.45	□□□□□ -2.34
UBP3	YER151C	PAU24	P38155	120 aa		0.45	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 86.7 ms