RNA–Protein interactions for RNA: YDR427W

RPN9, Transcript of Non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN9, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN9	YDR427W	IPT1	P38954	527 aa		1.05	□□□□□ -2.24
RPN9	YDR427W	TIM8	P57744	87 aa		1.05	□□□□□ -2.24
RPN9	YDR427W	YPR117W	Q06116	2489 aa		1.04	□□□□□ -2.24
RPN9	YDR427W	YGL041W-A	P0C5N3	154 aa		1.04	□□□□□ -2.24
RPN9	YDR427W	DDR48	P18899	430 aa	Known RBP	1.04	□□□□□ -2.24
RPN9	YDR427W	ARC19	P33204	171 aa	Known RBP	1.03	□□□□□ -2.24
RPN9	YDR427W	SCS22	Q6Q595	175 aa		1.03	□□□□□ -2.24
RPN9	YDR427W	RIB3	Q99258	208 aa		1.03	□□□□□ -2.24
RPN9	YDR427W	TAO3	P40468	2376 aa		1.03	□□□□□ -2.25
RPN9	YDR427W	RPL22A	P05749	121 aa	Known RBP	1.02	□□□□□ -2.25
RPN9	YDR427W	HYP2	P23301	157 aa	Known RBP	1.02	□□□□□ -2.25
RPN9	YDR427W	EFM5	P53200	248 aa	Known RBP	1.02	□□□□□ -2.25
RPN9	YDR427W	RRT7	Q07829	113 aa		1.02	□□□□□ -2.25
RPN9	YDR427W	PET20	Q99373	253 aa		1.02	□□□□□ -2.25
RPN9	YDR427W	ATP19	P81451	68 aa		1.01	□□□□□ -2.25
RPN9	YDR427W	RAV2	Q03956	351 aa		1.01	□□□□□ -2.25
RPN9	YDR427W	OCA6	Q12454	224 aa		1.01	□□□□□ -2.25
RPN9	YDR427W	HHY1	P39982	102 aa		1	□□□□□ -2.25
RPN9	YDR427W	GPI2	P46961	280 aa		1	□□□□□ -2.25
RPN9	YDR427W	EMC4	P53073	190 aa		1	□□□□□ -2.25
RPN9	YDR427W	SEN15	Q04675	128 aa		1	□□□□□ -2.25
RPN9	YDR427W	YPR153W	Q06537	140 aa		1	□□□□□ -2.25
RPN9	YDR427W	GPI11	Q06636	219 aa		1	□□□□□ -2.25
RPN9	YDR427W	HAP2	P06774	265 aa		0.99	□□□□□ -2.25
RPN9	YDR427W	YNL122C	P53921	115 aa	Predicted RBP	0.99	□□□□□ -2.25
RPN9	YDR427W	EST3	Q03096	181 aa		0.99	□□□□□ -2.25
RPN9	YDR427W	PKR1	Q03880	122 aa	Known RBP	0.99	□□□□□ -2.25
RPN9	YDR427W	FMP27	Q06179	2628 aa		0.99	□□□□□ -2.25
RPN9	YDR427W	QCR6	P00127	147 aa		0.98	□□□□□ -2.25
RPN9	YDR427W	HSP12	P22943	109 aa	Known RBP	0.98	□□□□□ -2.25
RPN9	YDR427W	YBR032W	P38223	100 aa		0.98	□□□□□ -2.25
RPN9	YDR427W	SMX2	P40204	77 aa	Known RBP	0.98	□□□□□ -2.25
RPN9	YDR427W	VMA10	P48836	114 aa	Known RBP	0.98	□□□□□ -2.25
RPN9	YDR427W	SED1	Q01589	338 aa		0.98	□□□□□ -2.25
RPN9	YDR427W	SWC7	Q06707	132 aa		0.98	□□□□□ -2.25
RPN9	YDR427W	YKL068W-A	Q3E826	78 aa		0.98	□□□□□ -2.25
RPN9	YDR427W	NHP6A	P11632	93 aa	Known RBP	0.97	□□□□□ -2.25
RPN9	YDR427W	AIM18	P38884	321 aa		0.97	□□□□□ -2.25
RPN9	YDR427W	DIE2	P50076	525 aa		0.97	□□□□□ -2.25
RPN9	YDR427W	YBR056W-A	I2HB52	66 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	COX5B	P00425	151 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	RPL33A	P05744	107 aa	Known RBP	0.96	□□□□□ -2.26
RPN9	YDR427W	PET54	P10834	293 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	YCR099C	P25657	155 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	MOG1	P47123	218 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	YCL001W-A	P87012	153 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	CSF1	Q12150	2958 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	YKL018C-A	Q3E7A7	99 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	MHF1	Q3E835	90 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	YHR213W-B	Q8TGK1	99 aa		0.96	□□□□□ -2.26
RPN9	YDR427W	TOR2	P32600	2474 aa	Known RBP	0.96	□□□□□ -2.26
RPN9	YDR427W	BRR2	P32639	2163 aa	Known RBP	0.96	□□□□□ -2.26
RPN9	YDR427W	POL2	P21951	2222 aa	Known RBP	0.95	□□□□□ -2.26
RPN9	YDR427W	IPI1	P38803	334 aa	Predicted RBP	0.95	□□□□□ -2.26
RPN9	YDR427W	YGR201C	P42936	225 aa		0.95	□□□□□ -2.26
RPN9	YDR427W	MGR2	Q02889	113 aa		0.95	□□□□□ -2.26
RPN9	YDR427W	CSN9	Q03981	162 aa		0.95	□□□□□ -2.26
RPN9	YDR427W	YOR072W	Q08486	104 aa		0.95	□□□□□ -2.26
RPN9	YDR427W	IRA2	P19158	3079 aa		0.94	□□□□□ -2.26
RPN9	YDR427W	SRX1	P36077	127 aa		0.94	□□□□□ -2.26
RPN9	YDR427W	HPM1	P40481	377 aa		0.94	□□□□□ -2.26
RPN9	YDR427W	RPL22B	P56628	122 aa	Known RBP	0.94	□□□□□ -2.26
RPN9	YDR427W	YDR366C	P87287	132 aa		0.94	□□□□□ -2.26
RPN9	YDR427W	YMR320W	Q04897	101 aa		0.94	□□□□□ -2.26
RPN9	YDR427W	RPS22A	P0C0W1	130 aa	Known RBP	0.93	□□□□□ -2.26
RPN9	YDR427W	YGL014C-A	P0C5N1	53 aa		0.93	□□□□□ -2.26
RPN9	YDR427W	FYV5	P25585	152 aa		0.93	□□□□□ -2.26
RPN9	YDR427W	CYC2	P38909	366 aa		0.93	□□□□□ -2.26
RPN9	YDR427W	LDB18	Q07887	179 aa		0.93	□□□□□ -2.26
RPN9	YDR427W	YPL225W	Q08971	146 aa	Known RBP	0.93	□□□□□ -2.26
RPN9	YDR427W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.93	□□□□□ -2.26
RPN9	YDR427W	IRA1	P18963	3092 aa		0.92	□□□□□ -2.26
RPN9	YDR427W	RPL40A	P0CH08	128 aa	Known RBP	0.92	□□□□□ -2.26
RPN9	YDR427W	RPL40B	P0CH09	128 aa	Known RBP	0.92	□□□□□ -2.26
RPN9	YDR427W	RPS1B	P23248	255 aa	Known RBP	0.92	□□□□□ -2.26
RPN9	YDR427W	RPC19	P28000	142 aa	Known RBP	0.92	□□□□□ -2.26
RPN9	YDR427W	RBL2	P48606	106 aa	Known RBP	0.92	□□□□□ -2.26
RPN9	YDR427W	YIL046W-A	Q3E7Z4	54 aa		0.92	□□□□□ -2.26
RPN9	YDR427W	TEL1	P38110	2787 aa		0.92	□□□□□ -2.26
RPN9	YDR427W	CUP1-1	P0CX80	61 aa		0.91	□□□□□ -2.26
RPN9	YDR427W	CUP1-2	P0CX81	61 aa		0.91	□□□□□ -2.26
RPN9	YDR427W	NMT1	P14743	455 aa		0.91	□□□□□ -2.26
RPN9	YDR427W	LHP1	P33399	275 aa	Known RBP	0.91	□□□□□ -2.26
RPN9	YDR427W	SRL3	P36167	246 aa		0.91	□□□□□ -2.26
RPN9	YDR427W	PDX3	P38075	228 aa	Known RBP	0.91	□□□□□ -2.26
RPN9	YDR427W	LSM1	P47017	172 aa	Known RBP	0.91	□□□□□ -2.26
RPN9	YDR427W	SPG1	P50088	95 aa		0.91	□□□□□ -2.26
RPN9	YDR427W	HHO1	P53551	258 aa		0.91	□□□□□ -2.26
RPN9	YDR427W	HUT1	Q12520	339 aa		0.91	□□□□□ -2.26
RPN9	YDR427W	SEC16	P48415	2195 aa	Known RBP	0.91	□□□□□ -2.26
RPN9	YDR427W	PRP8	P33334	2413 aa	Known RBP	0.9	□□□□□ -2.26
RPN9	YDR427W	SUI1	P32911	108 aa	Known RBP	0.9	□□□□□ -2.27
RPN9	YDR427W	RPS1A	P33442	255 aa	Known RBP	0.9	□□□□□ -2.27
RPN9	YDR427W	RPS27A	P35997	82 aa	Known RBP	0.9	□□□□□ -2.27
RPN9	YDR427W	RPS27B	P38711	82 aa		0.9	□□□□□ -2.27
RPN9	YDR427W	YIL086C	P40503	102 aa		0.9	□□□□□ -2.27
RPN9	YDR427W	PHB1	P40961	287 aa		0.9	□□□□□ -2.27
RPN9	YDR427W	LSM8	P47093	109 aa	Known RBP	0.9	□□□□□ -2.27
RPN9	YDR427W	YGR039W	P53225	103 aa		0.9	□□□□□ -2.27
RPN9	YDR427W	YMR122C	Q03879	124 aa		0.9	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 60.1 ms