RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RAB9BQ9NP90 201 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 C11orf16Q9NQ32 467 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 GPRASP1Q5JY77 1395 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 CARMIL1Q5VZK9 1371 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 AKAP11Q9UKA4 1901 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 SDK2Q58EX2 2172 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 CKAP5Q14008 2032 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1W2PPH5 198 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 BTN3A1O00481 513 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 EGFRP00533 1210 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CSTAP01040 98 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CYP17A1P05093 508 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FCER2P06734 321 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 UBTFL6P0CB48 400 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 KRT15P19012 456 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CARSP49589 748 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CASP9P55211 416 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 YWHAHQ04917 246 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PCDH1Q08174 1060 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PKN2Q16513 984 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF658Q5TYW1 1059 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC137Q6PK04 289 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 DHX32Q7L7V1 743 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 LRRC6Q86X45 466 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CATSPER1Q8NEC5 780 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 BCL7BQ9BQE9 202 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 C7orf50Q9BRJ6 194 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 BTBD2Q9BX70 525 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF395Q9H8N7 513 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 EPB41L5Q9HCM4 733 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GRHL1Q9NZI5 618 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 BLACEA4D250 179 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 RIMBP2O15034 1052 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SLC7A4O43246 635 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 STAT5AP42229 794 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 KPNA2P52292 529 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM63BQ5T3F8 832 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ELMOD2Q8IZ81 293 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SCFD1Q8WVM8 642 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TRIB2Q92519 343 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PEX13Q92968 403 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 KLHL4Q9C0H6 718 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 XKR8Q9H6D3 395 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ITM2CQ9NQX7 267 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHGB1Q9Y5G3 927 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SMAD7O15105 426 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MAGP20916 626 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 HLA-FP30511 346 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 STARP49675 285 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 NRLP54845 237 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 RHAGQ02094 409 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ATP13A5Q4VNC0 1218 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SPDYCQ5MJ68 293 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 COMTD1Q86VU5 262 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SH2D3CQ8N5H7 860 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 DNAAF3Q8N9W5 541 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GSDMCQ9BYG8 508 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CLK4Q9HAZ1 481 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GIT1Q9Y2X7 761 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHGA2Q9Y5H1 932 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC78A2IDD5 438 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 A6NLC8 198 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 DDX39AO00148 427 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MEFVO15553 781 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 USP12O75317 370 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TXNDC12O95881 172 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 OCM2P0CE71 109 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 OCMP0CE72 109 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 KCNA5P22460 613 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 C12orf60Q5U649 245 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FAM122CQ6P4D5 195 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 RAB3IPQ96QF0 476 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 THUMPD3Q9BV44 507 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ANKRD2Q9GZV1 360 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TRIT1Q9H3H1 467 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ARMCX3Q9UH62 379 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SCAF8Q9UPN6 1271 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ASTN2O75129 1339 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 RNF123Q5XPI4 1314 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ASNA1O43681 348 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FBXO24O75426 580 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ANXA8P13928 327 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MAGEA1P43355 309 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 IL2P60568 153 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 HTRA4P83105 476 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 REEP5Q00765 189 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 GUCY2DQ02846 1103 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 SGSM1Q2NKQ1 1148 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 FBXO48Q5FWF7 155 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ANXA8L1Q5VT79 327 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ARMCX2Q7L311 632 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 PPP1R35Q8TAP8 253 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 POC1BQ8TC44 478 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 TAMM41Q96BW9 452 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 REPIN1Q9BWE0 567 aaKnown RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 CREBZFQ9NS37 354 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 MID2Q9UJV3 735 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 H3BQ06 376 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-221ENST00000641996 ANXA6P08133 673 aa3.71□□□□□ -1.82
SCN1A-221ENST00000641996 EEF1DP29692 281 aaKnown RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms