RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MYO16Q9Y6X6 1858 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NEMP2A6NFY4 417 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 INO80B-WBP1J3KQ70 363 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZBTB43O43298 467 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CD4P01730 458 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ATP5BP06576 529 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NR2C1P13056 603 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CHMP24386 653 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 AVPR1AP37288 418 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PER3P56645 1201 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NUP107P57740 925 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CRYMQ14894 314 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 LONRF1Q17RB8 773 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLC25A24Q6NUK1 477 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NECAB2Q7Z6G3 386 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IQUBQ8NA54 791 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MTMR9Q96QG7 549 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PARVAQ9NVD7 372 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PITPNM2Q9BZ72 1349 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ROS1P08922 2347 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM64BA6NI03 449 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CCNT1O60563 726 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 GAS7O60861 476 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SERPINA3P01011 423 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PRLP01236 227 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 TP53P04637 393 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MYL3P08590 195 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ITGA4P13612 1032 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 IGFALSP35858 605 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 UQCRFS1P47985 274 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EIF4A1P60842 406 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 YWHAGP61981 247 aaKnown RBP eCLIP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MKRN3Q13064 507 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 INPP5AQ14642 412 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 EDRF1Q3B7T1 1238 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 C6orf183Q5T699 404 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PYHIN1Q6K0P9 492 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 NSMFQ6X4W1 530 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ARHGAP36Q6ZRI8 547 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 FGD2Q7Z6J4 655 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF227Q86WZ6 799 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 AFG1LQ8WV93 481 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CPNE2Q96FN4 548 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MNTQ99583 582 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SLF1Q9BQI6 1058 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL1Q9BYD6 325 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 PAIP1Q9H074 479 aaKnown RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CBX8Q9HC52 389 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CD209Q9NNX6 404 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF302Q9NR11 478 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 USE1Q9NZ43 259 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 CORO1CQ9ULV4 474 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-219ENST00000641575 SNX12Q9UMY4 172 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 INVSQ9Y283 1065 aa2.89□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC53A6NM62 1247 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PDCD5O14737 125 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GNB5O14775 395 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM24O15164 1050 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 BNIP3LO60238 219 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 AHSGP02765 367 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ALPPP05187 535 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ZCCHC18P0CG32 403 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 HSMCR30P0CW71 290 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SLC2A3P11169 496 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 YWHABP31946 246 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GPSM2P81274 684 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 UBE3CQ15386 1083 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 TERF2Q15554 542 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 KCNIP4Q6PIL6 250 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC60Q8IWA6 550 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 XAGE2Q96GT9 111 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ALG1Q9BT22 464 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF341Q9BYN7 854 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 REXO4Q9GZR2 422 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 MUC4Q99102 2169 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 EIF2AK4Q9P2K8 1649 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RALGAPBQ86X10 1494 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 KCNK3O14649 394 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 NKRFO15226 690 aaKnown RBP eCLIP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 CSTBP04080 98 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ESRRAP11474 423 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SAMD4BQ5PRF9 694 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PTF1AQ7RTS3 328 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SYT2Q8N9I0 419 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 OTULINQ96BN8 352 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PPP1R16BQ96T49 567 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 NUSAP1Q9BXS6 441 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 VIPAS39Q9H9C1 493 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 AHSPQ9NZD4 102 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 STK17AQ9UEE5 414 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ACANP16112 2415 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 RNF103-CHMP3A0A140T963 221 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 IDH3BO43837 385 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 SNAPC5O75971 98 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 IFNB1P01574 187 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PABPC1P11940 636 aaKnown RBP2.88□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF3P17036 446 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 GUCY2DQ02846 1103 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 IKBKEQ14164 716 aa2.88□□□□□ -1.95
SCN1A-219ENST00000641575 PPP1R18Q6NYC8 613 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms