RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CPSF3Q9UKF6 684 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 POU2F3Q9UKI9 436 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PADI4Q9UM07 663 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 POLHQ9Y253 713 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 HLA-DRAP01903 254 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ATF2P15336 505 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CLK1P49759 484 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 SLC12A2P55011 1212 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CYP4A11Q02928 519 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 RAD51Q06609 339 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 GALNT1Q10472 559 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 IFIT5Q13325 482 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MAPRE2Q15555 327 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MAPK11Q15759 364 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MDH1BQ5I0G3 518 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MFSD5Q6N075 450 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PLEKHM3Q6ZWE6 761 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ADCK1Q86TW2 530 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 GPBP1Q86WP2 473 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PALM2Q8IXS6 379 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 KBTBD2Q8IY47 623 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ULK2Q8IYT8 1036 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PCYOX1LQ8NBM8 494 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 AFG1LQ8WV93 481 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TRUB1Q8WWH5 349 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 GCOM2Q9BZD3 368 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FANCEQ9HB96 536 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CYP4F11Q9HBI6 524 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TUFT1Q9NNX1 390 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ARL8BQ9NVJ2 186 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CEP72Q9P209 647 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 INPP5FQ9Y2H2 1132 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PTPN22Q9Y2R2 807 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MYO5CQ9NQX4 1742 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ADGBQ8N7X0 1667 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CAPN8A6NHC0 703 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ZBBXA8MT70 800 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PDZK1P1A8MUH7 402 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 A8MX80 341 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CLDN25C9JDP6 229 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FGAP02671 866 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CD44P16070 742 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ITGALP20701 1170 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PTPN9P43378 593 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ETV1P50549 477 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ANO4Q32M45 955 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FIGNQ5HY92 759 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 LVRNQ6Q4G3 990 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 IDO2Q6ZQW0 420 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ZNF589Q86UQ0 364 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CABLES1Q8TDN4 633 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 DCUN1D1Q96GG9 259 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FRMD8Q9BZ67 464 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 NEUROG2Q9H2A3 272 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 HIPK3Q9H422 1215 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ZDHHC7Q9NXF8 308 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ERGIC3Q9Y282 383 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ABCA8O94911 1581 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ATP6V1G2-DDX39BF2Z307 99 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 RNF225M0QZC1 329 aaPredicted RBP5.96□□□□□ -1.45
SCN1A-216ENST00000637968 NOP56O00567 594 aaKnown RBP5.96□□□□□ -1.45
SCN1A-216ENST00000637968 ALOX15BO15296 676 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 GAS2O43903 313 aaKnown RBP5.96□□□□□ -1.45
SCN1A-216ENST00000637968 EDF1O60869 148 aaKnown RBP5.96□□□□□ -1.45
SCN1A-216ENST00000637968 TM7SF2O76062 418 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 PLEKP08567 350 aaPredicted RBP5.96□□□□□ -1.45
SCN1A-216ENST00000637968 CCNA2P20248 432 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 PEX2P28328 305 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 IL12RB1P42701 662 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 P2RX3P56373 397 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 SNX16P57768 344 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 ACTR3P61158 418 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 PRAMEP78395 509 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 CDK16Q00536 496 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 HSPA14Q0VDF9 509 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 GRM2Q14416 872 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 MAPRE1Q15691 268 aaKnown RBP5.96□□□□□ -1.45
SCN1A-216ENST00000637968 MAN2A1Q16706 1144 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 SFT2D3Q587I9 215 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 KIAA1841Q6NSI8 718 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 ZNF786Q8N393 782 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 GRK7Q8WTQ7 553 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 LRRC39Q96DD0 335 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 CNPY3Q9BT09 278 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 SLC4A5Q9BY07 1137 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 EDEM3Q9BZQ6 932 aa5.96□□□□□ -1.45
SCN1A-216ENST00000637968 TEX51A0A1B0GUA7 166 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 HNRNPCL2B2RXH8 293 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 H3BUI4 141 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 FCHO1O14526 889 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 OR7A10O76100 309 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 OR5F1O95221 314 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 SLC5A1P13866 664 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF23P17027 643 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ABCB4P21439 1286 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 KLRC1P26715 233 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 CASP1P29466 404 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PKLRP30613 574 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 RPS3AP61247 264 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 B2MP61769 119 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms