RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 GIPC1O14908 333 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 NOL3O60936 208 aaKnown RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 RBP3P10745 1247 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 THRAP10827 490 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 ARL1P40616 181 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 PIK3CAP42336 1068 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 RPS8P62241 208 aaKnown RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 C15orf52Q6ZUT6 534 aaKnown RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 AMIGO2Q86SJ2 522 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 RAVER1Q8IY67 606 aaKnown RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 RBM15BQ8NDT2 890 aaKnown RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 CERKQ8TCT0 537 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 JADE3Q92613 823 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 HES6Q96HZ4 224 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 CD209Q9NNX6 404 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 TYW1Q9NV66 732 aaKnown RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 KBTBD4Q9NVX7 518 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 SENP1Q9P0U3 644 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 STK17AQ9UEE5 414 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 DAPK2Q9UIK4 370 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 ANGPTL3Q9Y5C1 460 aa7.14□□□□□ -1.27
SCN1A-213ENST00000636759 ZNFX1Q9P2E3 1918 aaKnown RBP7.14□□□□□ -1.27
SCN1A-213ENST00000636759 H3BNX3 289 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ZBTB48P10074 688 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 KLRK1P26718 216 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 RPS3AP61247 264 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ITGADQ13349 1161 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 TLR1Q15399 786 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 TRIP13Q15645 432 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CYP2A13Q16696 494 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 RARS2Q5T160 578 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 PLEKHA7Q6IQ23 1121 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 FBXL19Q6PCT2 694 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 TAS2R42Q7RTR8 314 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CLVS1Q8IUQ0 354 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 PCYOX1LQ8NBM8 494 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 TSPAN14Q8NG11 270 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 KLC2Q9H0B6 622 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ERVK-5Q9HDB9 667 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CCDC177Q9NQR7 707 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 PPARGC1AQ9UBK2 798 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 LGALS13Q9UHV8 139 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 SERPINA10Q9UK55 444 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 EXOC7Q9UPT5 735 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 AP4B1Q9Y6B7 739 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 SQORQ9Y6N5 450 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ABCB11O95342 1321 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 SYNGAP1Q96PV0 1343 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ZMYM2Q9UBW7 1377 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 EXOC1LA0A1B0GW35 172 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 hCG_1642624A0A1W2PR95 340 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CENPBD1B2RD01 187 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 NMT2O60551 498 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 DDAH1O94760 285 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 PRKCIP41743 596 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 SLC1A1P43005 524 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 NOVP48745 357 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CASP5P51878 434 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 HNRNPFP52597 415 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 EPHB1P54762 984 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 PSMD6Q15008 389 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CRY1Q16526 586 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 PFKFB3Q16875 520 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 HERC4Q5GLZ8 1057 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 LVRNQ6Q4G3 990 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 DTHD1Q6ZMT9 781 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 RNF19BQ6ZMZ0 732 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 C4orf33Q8N1A6 199 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CACTIN-AS1Q8N1I8 211 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 UBL4BQ8N7F7 174 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 TERB1Q8NA31 727 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CATSPER1Q8NEC5 780 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ART4Q93070 314 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 NSUN4Q96CB9 384 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 WNK4Q96J92 1243 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 TMEM120AQ9BXJ8 343 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 XAB2Q9HCS7 855 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ZNF304Q9HCX3 659 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 MAN1C1Q9NR34 630 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 IL17RBQ9NRM6 502 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ARMCX1Q9P291 453 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 NAGPAQ9UK23 515 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 INPP5FQ9Y2H2 1132 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 TLL2Q9Y6L7 1015 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 DENRO43583 198 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 UGT1A9O60656 530 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 C6orf222P0C671 652 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 POLR2MP0CAP2 368 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 RAG1P15918 1043 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 UGT1A6P19224 532 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 UGT1A1P22309 533 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 UGT1A4P22310 534 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ADSLP30566 484 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 UGT1A3P35503 534 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 UGT1A5P35504 534 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 ETV3P41162 512 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 IREB2P48200 963 aaKnown RBP7.13□□□□□ -1.27
SCN1A-213ENST00000636759 AP3M2P53677 418 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 CD300CQ08708 224 aa7.13□□□□□ -1.27
SCN1A-213ENST00000636759 PTK2BQ14289 1009 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms