RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SH3RF2Q8TEC5 729 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 OSCP1Q8WVF1 389 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 GAB3Q8WWW8 586 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 FOXD4L4Q8WXT5 416 aaPredicted RBP17.29■□□□□ 0.36
CLN3-246ENST00000636228 DHX58Q96C10 678 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 HHIPQ96QV1 700 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 MMS19Q96T76 1030 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 TRIM9Q9C026 710 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 ZSCAN16Q9H4T2 348 aaPredicted RBP17.29■□□□□ 0.36
CLN3-246ENST00000636228 GCNT4Q9P109 453 aa17.29■□□□□ 0.36
CLN3-246ENST00000636228 MAGEC2Q9UBF1 373 aaPredicted RBP17.29■□□□□ 0.36
CLN3-246ENST00000636228 NUP210Q8TEM1 1887 aaPredicted RBP17.29■□□□□ 0.36
CLN3-246ENST00000636228 ANTXRLA6NF34 631 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 SOBPA7XYQ1 873 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 SLC30A4O14863 429 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 CLIC2O15247 247 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 SPTLC2O15270 562 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 ATG13O75143 517 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 RPP40O75818 363 aaKnown RBP17.28■□□□□ 0.36
CLN3-246ENST00000636228 CCDC192P0DO97 292 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 KCNA4P22459 653 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 CASP1P29466 404 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 GRIK1P39086 918 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 IFNAR2P48551 515 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 ASIC1P78348 528 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 ZXDBP98169 803 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 CYP27A1Q02318 531 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 PSMD2Q13200 908 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 DPH6Q7L8W6 267 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 NELFCDQ8IXH7 590 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 CPA6Q8N4T0 437 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 RPLP0P6Q8NHW5 317 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 INTS4Q96HW7 963 aaKnown RBP17.28■□□□□ 0.36
CLN3-246ENST00000636228 FUBP3Q96I24 572 aaKnown RBP eCLIP17.28■□□□□ 0.36
CLN3-246ENST00000636228 MRPL45Q9BRJ2 306 aaKnown RBP17.28■□□□□ 0.36
CLN3-246ENST00000636228 TNMDQ9H2S6 317 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 SMOC1Q9H4F8 434 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 RXFP3Q9NSD7 469 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 KBTBD4Q9NVX7 518 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 CDH9Q9ULB4 789 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 NME7Q9Y5B8 376 aa17.28■□□□□ 0.36
CLN3-246ENST00000636228 MORC2Q9Y6X9 1032 aaPredicted RBP17.28■□□□□ 0.36
CLN3-246ENST00000636228 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.27■□□□□ 0.36
CLN3-246ENST00000636228 DLATP10515 647 aaKnown RBP17.27■□□□□ 0.36
CLN3-246ENST00000636228 HDCP19113 662 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 DRD1P21728 446 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 CYP2J2P51589 502 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 AMPD2Q01433 879 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 USP4Q13107 963 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 EML3Q32P44 896 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 FOXD4L6Q3SYB3 417 aaPredicted RBP17.27■□□□□ 0.36
CLN3-246ENST00000636228 MDH1BQ5I0G3 518 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 PPM1JQ5JR12 505 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 FOXD4L3Q6VB84 417 aaPredicted RBP17.27■□□□□ 0.36
CLN3-246ENST00000636228 C4orf50Q6ZRC1 276 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 STXBP4Q6ZWJ1 553 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 TRAPPC11Q7Z392 1133 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 CACNA2D4Q7Z3S7 1137 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 FSIP1Q8NA03 581 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 SPATA18Q8TC71 538 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 CD101Q93033 1021 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 CCDC127Q96BQ5 260 aa17.27■□□□□ 0.36
CLN3-246ENST00000636228 SCAMP3O14828 347 aaKnown RBP17.26■□□□□ 0.35
CLN3-246ENST00000636228 DCLK1O15075 740 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 KIAA0391O15091 583 aaKnown RBP17.26■□□□□ 0.35
CLN3-246ENST00000636228 TGFB1I1O43294 461 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 TNNI1P19237 187 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 WARSP23381 471 aaKnown RBP17.26■□□□□ 0.35
CLN3-246ENST00000636228 GNL1P36915 607 aaPredicted RBP17.26■□□□□ 0.35
CLN3-246ENST00000636228 MAGEA11P43364 429 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 KCNB1Q14721 858 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 SURF1Q15526 300 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 AASDHQ4L235 1098 aaPredicted RBP17.26■□□□□ 0.35
CLN3-246ENST00000636228 SHC4Q6S5L8 630 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 EPM2AIP1Q7L775 607 aaPredicted RBP17.26■□□□□ 0.35
CLN3-246ENST00000636228 WDR49Q8IV35 697 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 ZNF507Q8TCN5 953 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 ATP2A3Q93084 1043 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 PCED1BQ96HM7 432 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 BLZF1Q9H2G9 400 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 AGPAT3Q9NRZ7 376 aa17.26■□□□□ 0.35
CLN3-246ENST00000636228 TCHHQ07283 1943 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 K7ELQ4 463 aaPredicted RBP17.25■□□□□ 0.35
CLN3-246ENST00000636228 ABL1P00519 1130 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 RAP1GAPP47736 663 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 CACNA2D1P54289 1103 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 SEC13P55735 322 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 SNRNP35Q16560 246 aaKnown RBP17.25■□□□□ 0.35
CLN3-246ENST00000636228 FAM26FQ5R3K3 315 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 VSTM1Q6UX27 236 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 DENND5BQ6ZUT9 1274 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 HS2ST1Q7LGA3 356 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 OR6B3Q8NGW1 331 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 ZNF516Q92618 1163 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 ELMO3Q96BJ8 720 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 SPATA17Q96L03 361 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 LRRC27Q9C0I9 530 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 RNF38Q9H0F5 515 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 SNX25Q9H3E2 840 aa17.25■□□□□ 0.35
CLN3-246ENST00000636228 DPEP3Q9H4B8 488 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms