RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GOLGA2P5Q9HBQ8 144 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 NINJ2Q9NZG7 142 aa11.18□□□□□ -0.62
CUX1-221ENST00000622516 GMNCA6NCL1 334 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 TTC4O95801 387 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 SMIM10L2AP0DMW4 78 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 SMIM10L2BP0DMW5 78 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 CYP2B6P20813 491 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 RBP5P82980 135 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 OLFML2BQ68BL8 750 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 CYP4X1Q8N118 509 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 KCTD6Q8NC69 237 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 EMID1Q96A84 441 aaPredicted RBP11.17□□□□□ -0.62
CUX1-221ENST00000622516 RBM15Q96T37 977 aaKnown RBP eCLIP11.17□□□□□ -0.621e-11■■■■□ 20.4
CUX1-221ENST00000622516 LHX5Q9H2C1 402 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 RNF39Q9H2S5 420 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 MORF4L1Q9UBU8 362 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 STRIP2Q9ULQ0 834 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 C3orf70A6NLC5 250 aaPredicted RBP11.17□□□□□ -0.62
CUX1-221ENST00000622516 PAEPP09466 180 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 CYP2C9P11712 490 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 IBSPP21815 317 aaPredicted RBP11.17□□□□□ -0.62
CUX1-221ENST00000622516 OTUD4Q01804 1114 aaKnown RBP11.17□□□□□ -0.62
CUX1-221ENST00000622516 C6orf118Q5T5N4 469 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 PMF1Q6P1K2 205 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 SCYL2Q6P3W7 929 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 NPNTQ6UXI9 565 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 ANKRD23Q86SG2 305 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 EXOC3L1Q86VI1 746 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 KAT2BQ92831 832 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 PGM2Q96G03 612 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 CFAP57Q96MR6 1250 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 PEBP4Q96S96 227 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 PRMT1Q99873 361 aaKnown RBP11.17□□□□□ -0.62
CUX1-221ENST00000622516 TRIM6Q9C030 488 aaPredicted RBP11.17□□□□□ -0.62
CUX1-221ENST00000622516 MIS12Q9H081 205 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 ADAMTS10Q9H324 1103 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 DPEP3Q9H4B8 488 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 HOMER3Q9NSC5 361 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 CACNG4Q9UBN1 327 aa11.17□□□□□ -0.62
CUX1-221ENST00000622516 BARX2Q9UMQ3 279 aaPredicted RBP11.17□□□□□ -0.62
CUX1-221ENST00000622516 TREHO43280 583 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 TRAPPC3O43617 180 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 PECAM1P16284 738 aaPredicted RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 IGFBP6P24592 240 aaPredicted RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 POU5F1BQ06416 359 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 CCDC142Q17RM4 750 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 SPDYCQ5MJ68 293 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 ZNF618Q5T7W0 954 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 FAM183BPQ6ZVS7 135 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 TRMT10CQ7L0Y3 403 aaKnown RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 IFNLR1Q8IU57 520 aaPredicted RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 CCDC33Q8N5R6 958 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 C2orf69Q8N8R5 385 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 PARK7Q99497 189 aaKnown RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 NT5C1AQ9BXI3 368 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 SAYSD1Q9NPB0 183 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 GPATCH2LQ9NWQ4 482 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 GPR32O75388 356 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 FAM107AO95990 144 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 PFKMP08237 780 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 KDELR1P24390 212 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 YARSP54577 528 aaKnown RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 IFT88Q13099 833 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 CNGA2Q16280 664 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 GOLGA7BQ2TAP0 167 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 PPP1R2P3Q6NXS1 205 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 ZC3H18Q86VM9 953 aaKnown RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 TAX1BP1Q86VP1 789 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 ALLCQ8N6M5 410 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 OR6B3Q8NGW1 331 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 RXFP2Q8WXD0 754 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 MAGEB5Q9BZ81 275 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 USP18Q9UMW8 372 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 PIN4Q9Y237 131 aaKnown RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 LOC102724159A0A0B4J2E5 919 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 P4HA1P13674 534 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 PDGFRAP16234 1089 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 LIG3P49916 1009 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 MYO1EQ12965 1108 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 PWP2Q15269 919 aaKnown RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 FAM110CQ1W6H9 321 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 NBPF20Q3BBV1 942 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 CST9Q5W186 159 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 HIBCHQ6NVY1 386 aaPredicted RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 RFX6Q8HWS3 928 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 ANKMY2Q8IV38 441 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 ANKRD42Q8N9B4 389 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 CLEC4CQ8WTT0 213 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 GTF3C2Q8WUA4 911 aaPredicted RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 ARHGEF2Q92974 986 aaKnown RBP11.16□□□□□ -0.62
CUX1-221ENST00000622516 KCNK9Q9NPC2 374 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 ITGA11Q9UKX5 1188 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 SH3BP1Q9Y3L3 701 aa11.16□□□□□ -0.62
CUX1-221ENST00000622516 A6NNZ2 444 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 IGF2BP3O00425 579 aaKnown RBP eCLIP11.15□□□□□ -0.62
CUX1-221ENST00000622516 RNF8O76064 485 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 RECQL4O94761 1208 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 MYL3P08590 195 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 VDRP11473 427 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 TFE3P19532 575 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms