RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TMEM191BP0C7N4 346 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 PFKFB1P16118 471 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 PCSK1P29120 753 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 LHX1P48742 406 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 TRIM68Q6AZZ1 485 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 FSTL4Q6MZW2 842 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.3■□□□□ 0.84
CDX1-202ENST00000616154 RIN3Q8TB24 985 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 NOC3LQ8WTT2 800 aaKnown RBP20.3■□□□□ 0.84
CDX1-202ENST00000616154 SCFD1Q8WVM8 642 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 FUBP3Q96I24 572 aaKnown RBP eCLIP20.3■□□□□ 0.84
CDX1-202ENST00000616154 CHAMP1Q96JM3 812 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 KIAA1549LQ6ZVL6 1849 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 EML5Q05BV3 1969 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 A0A1W2PQ27 194 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 A0A1W2PQ64 194 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 A0A1W2PQD8 194 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 TGFB1I1O43294 461 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 KLRC4O43908 158 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 MYL1P05976 194 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 AMPD2Q01433 879 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 GRSF1Q12849 480 aaKnown RBP eCLIP20.29■□□□□ 0.84
CDX1-202ENST00000616154 CUL4BQ13620 913 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 PDGFRLQ15198 375 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 SOWAHAQ2M3V2 549 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 CC2D1AQ6P1N0 951 aaPredicted RBP20.29■□□□□ 0.84
CDX1-202ENST00000616154 LIMS2Q7Z4I7 341 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 SPATA2LQ8IUW3 424 aaPredicted RBP20.29■□□□□ 0.84
CDX1-202ENST00000616154 ANKRD36BP1Q96IX9 119 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 SEMA4GQ9NTN9 838 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 INTS13Q9NVM9 706 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 SERTAD1Q9UHV2 236 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.29■□□□□ 0.84
CDX1-202ENST00000616154 TPRP12270 2363 aaKnown RBP20.29■□□□□ 0.84
CDX1-202ENST00000616154 MYO16Q9Y6X6 1858 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 PTPRJQ12913 1337 aa20.29■□□□□ 0.84
CDX1-202ENST00000616154 HCRTO43612 131 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 ARSAP15289 507 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 CASP1P29466 404 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 HOXC13P31276 330 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 MYO1EQ12965 1108 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 SURF1Q15526 300 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 CSRP2Q16527 193 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 CCDC142Q17RM4 750 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 PKN3Q6P5Z2 889 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 FAM171BQ6P995 826 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 DPH6Q7L8W6 267 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 C12orf56Q8IXR9 622 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 CEP57L1Q8IYX8 460 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 NETO1Q8TDF5 533 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 PAGE5Q96GU1 130 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 BLZF1Q9H2G9 400 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 KIAA1586Q9HCI6 787 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 AGPAT3Q9NRZ7 376 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 SDK1Q7Z5N4 2213 aa20.28■□□□□ 0.84
CDX1-202ENST00000616154 CCDC163A0A0D9SF12 145 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 ATG13O75143 517 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 MAGEA11P43364 429 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 FAM160A1Q05DH4 1040 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 MTF1Q14872 753 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 LMBRD2Q68DH5 695 aaPredicted RBP20.27■□□□□ 0.84
CDX1-202ENST00000616154 PRR23CQ6ZRP0 262 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 CEP68Q76N32 757 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 FAM160A2Q8N612 972 aaPredicted RBP20.27■□□□□ 0.84
CDX1-202ENST00000616154 OR5B17Q8NGF7 314 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 TMEM174Q8WUU8 243 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 HPDLQ96IR7 371 aa20.27■□□□□ 0.84
CDX1-202ENST00000616154 CGNQ9P2M7 1197 aaKnown RBP20.27■□□□□ 0.84
CDX1-202ENST00000616154 R3HCC1Q9Y3T6 440 aaKnown RBP20.27■□□□□ 0.84
CDX1-202ENST00000616154 TRAV19A0A0A6YYK7 116 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 A0A1B0GVL5 298 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 ZNF233A6NK53 670 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 SLC30A4O14863 429 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 FOXD2O60548 495 aaPredicted RBP20.27■□□□□ 0.83
CDX1-202ENST00000616154 TNNC2P02585 160 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 USP17L7P0C7H9 530 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 DRD1P21728 446 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 AFMP43652 599 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 USP4Q13107 963 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 ZNF77Q15935 545 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 DUOXA2Q1HG44 320 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 C4orf50Q6ZRC1 276 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 CBWD2Q8IUF1 395 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 SCN4BQ8IWT1 228 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 CPA6Q8N4T0 437 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 OSCP1Q8WVF1 389 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 KBTBD7Q8WVZ9 684 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 SLC22A12Q96S37 553 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 SYT15Q9BQS2 421 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 TRPC7Q9HCX4 862 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 HSPBP1Q9NZL4 362 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 CDH9Q9ULB4 789 aa20.27■□□□□ 0.83
CDX1-202ENST00000616154 DCDC2BA2VCK2 349 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 EGFP01133 1207 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 CKMP06732 381 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 GJA4P35212 333 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 WDR49Q8IV35 697 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 GRAMD1CQ8IYS0 662 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 FSIP1Q8NA03 581 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 GAB3Q8WWW8 586 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms