RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FKBP6O75344 327 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 CIB2O75838 187 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 ESRRBO95718 433 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 NDUFB10O96000 172 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 ZBTB48P10074 688 aaPredicted RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 PRKCIP41743 596 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 CDK9P50750 372 aaKnown RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 AQP4P55087 323 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PPP2R5EQ16537 467 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PCSK7Q16549 785 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 C15orf59Q2T9L4 293 aaPredicted RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 ZNF829Q3KNS6 432 aaPredicted RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 CCDC14Q49A88 953 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PRR16Q569H4 304 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 KIAA1755Q5JYT7 1200 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 HGSNATQ68CP4 663 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 RWDD4Q6NW29 188 aaKnown RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 DCLRE1AQ6PJP8 1040 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 POTEBQ6S5H4 581 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 USP43Q70EL4 1123 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 MMAAQ8IVH4 418 aaKnown RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 CYP2W1Q8TAV3 490 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 P2RX5Q93086 422 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 SNF8Q96H20 258 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PLEKHA8Q96JA3 519 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 BTBD9Q96Q07 612 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PAIP1Q9H074 479 aaKnown RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 SEMA6BQ9H3T3 888 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PALMDQ9NP74 551 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 KIAA1024Q9UPX6 916 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 DNAJC16Q9Y2G8 782 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 SIK3Q9Y2K2 1263 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 SNX24Q9Y343 169 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 IFT52Q9Y366 437 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 EDF1O60869 148 aaKnown RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 GUCY1B2O75343 617 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 FOSL1P15407 271 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PTENP60484 403 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 SLC15A2Q16348 729 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 SLC9C1Q4G0N8 1177 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 GPATCH4Q5T3I0 446 aaKnown RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 ZNF772Q68DY9 489 aaPredicted RBP10.68□□□□□ -0.7
VPS39-214ENST00000614932 RIPOR1Q6ZS17 1223 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 MARVELD2Q8N4S9 558 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 ACER1Q8TDN7 264 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 FAM172AQ8WUF8 416 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 AK8Q96MA6 479 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 BCAS3Q9H6U6 928 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 MMRN2Q9H8L6 949 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 VPS51Q9UID3 782 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 PFASO15067 1338 aa10.68□□□□□ -0.7
VPS39-214ENST00000614932 KIAA0391O15091 583 aaKnown RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 CRYZL1O95825 349 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 C21orf59P57076 290 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 ACTR3P61158 418 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 FOLH1Q04609 750 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 ATP1A4Q13733 1029 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 LRRC36Q1X8D7 754 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 HERC4Q5GLZ8 1057 aaPredicted RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 FBXL19Q6PCT2 694 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 RAVER1Q8IY67 606 aaKnown RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 ELMOD1Q8N336 334 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 BAP1Q92560 729 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 TRIM55Q9BYV6 548 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 PARP2Q9UGN5 583 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 RABGEF1Q9UJ41 708 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 PLIN4Q96Q06 1357 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 ESYT2A0FGR8 921 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 BTNL10A8MVZ5 291 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 RSPH10B2B2RC85 870 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 TSPAN1O60635 241 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 TMCC2O75069 709 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 TNFAIP8O95379 198 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 ZBTB11O95625 1053 aaPredicted RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 ABCB1P08183 1280 aaPredicted RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 RSPH10BP0C881 870 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 PPP1R2P41236 205 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 THOP1P52888 689 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 AGAP9Q5VTM2 703 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 PPP1R2P3Q6NXS1 205 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 RGS9BPQ6ZS82 235 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 TRMT1LQ7Z2T5 733 aaKnown RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 DHDDSQ86SQ9 333 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 SLC38A6Q8IZM9 456 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 CPSF7Q8N684 471 aaKnown RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 PCYOX1LQ8NBM8 494 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 FLAD1Q8NFF5 587 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 ZNF398Q8TD17 642 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 SCFD1Q8WVM8 642 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 C8orf48Q96LL4 319 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 CCDC138Q96M89 665 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 ANO3Q9BYT9 981 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS39-214ENST00000614932 SLCO1B3Q9NPD5 702 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 UBN1Q9NPG3 1134 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 TYW1Q9NV66 732 aaKnown RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 NCKIPSDQ9NZQ3 722 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 HACD3Q9P035 362 aa10.67□□□□□ -0.7
VPS39-214ENST00000614932 ARMCX3Q9UH62 379 aaPredicted RBP10.67□□□□□ -0.7
VPS39-214ENST00000614932 FAM170AA1A519 330 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms