RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NR2E1Q9Y466 385 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 PCDHB4Q9Y5E5 795 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 ATP8B3O60423 1300 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 LOC730098B7Z3J9 87 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 F8VP50 259 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 TRIM66O15016 1216 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 CCR2P41597 374 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 PRSS36Q5K4E3 855 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 CYP4A22Q5TCH4 519 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 LRSAM1Q6UWE0 723 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 PDZD4Q76G19 769 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 GET4Q7L5D6 327 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 ENOSF1Q7L5Y1 443 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 LEMD2Q8NC56 503 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 STKLD1Q8NE28 680 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 ITFG1Q8TB96 612 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 SMARCD1Q96GM5 515 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 C8orf48Q96LL4 319 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 FAM81BQ96LP2 452 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 KRT82Q9NSB4 513 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 DOCK8Q8NF50 2099 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 LGALS16A8MUM7 142 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 C2CD4DB7Z1M9 353 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 RNF225M0QZC1 329 aaPredicted RBP17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 CSH1P0DML2 217 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 CSH2P0DML3 217 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 HMGA1P17096 107 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 MFAP3P55082 362 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 FKBP15Q5T1M5 1219 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 PPP1R26Q5T8A7 1209 aaPredicted RBP17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 OTOP3Q7RTS5 596 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 TCEAL4Q96EI5 215 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 SPATA17Q96L03 361 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 CEP295NLQ96MC4 621 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 KCNK16Q96T55 309 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 UHRF1Q96T88 793 aaPredicted RBP17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 ZNF334Q9HCZ1 680 aaPredicted RBP17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 CNTN6Q9UQ52 1028 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 MRPS23Q9Y3D9 190 aaKnown RBP17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 NCOR1O75376 2440 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 TTC28Q96AY4 2481 aa17.56■□□□□ 0.4
CCDC28A-202ENST00000611852 SLC38A8A6NNN8 435 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 NRG2O14511 850 aaPredicted RBP17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 ZNF197O14709 1029 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 AP1G2O75843 785 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 BEST1O76090 585 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 NOL4O94818 638 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 PAEPP09466 180 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 MYL4P12829 197 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 ANXA13P27216 316 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 ADORA2BP29275 332 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 ZNF132P52740 706 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 MTMR3Q13615 1198 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 TAF12Q16514 161 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 TDRD5Q8NAT2 981 aaKnown RBP17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 RBBP8NLQ8NC74 664 aaPredicted RBP17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 ACSF2Q96CM8 615 aaPredicted RBP17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 MYADMQ96S97 322 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 TSPY26PQ9H489 355 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 CSNK1G1Q9HCP0 422 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 CD320Q9NPF0 282 aa17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 DMAP1Q9NPF5 467 aaPredicted RBP17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 AJAP1Q9UKB5 411 aaPredicted RBP17.55■□□□□ 0.4
CCDC28A-202ENST00000611852 MOSPD3O75425 235 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 MICAL2O94851 1124 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 GBP2P32456 591 aaPredicted RBP17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 UBXN1Q04323 297 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 ARHGAP44Q17R89 818 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 KLHDC7AQ5VTJ3 777 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 ARHGAP17Q68EM7 881 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 GAREM2Q75VX8 874 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 GJD3Q8N144 294 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 ZMIZ2Q8NF64 920 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 SHKBP1Q8TBC3 707 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 ING5Q8WYH8 240 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 FGF13Q92913 245 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 TRMT2BQ96GJ1 504 aaKnown RBP17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 MYRFLQ96LU7 910 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 SMOQ99835 787 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 LSM14BQ9BX40 385 aaKnown RBP17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 IL21Q9HBE4 155 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 PLCB1Q9NQ66 1216 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 DNAJC12Q9UKB3 198 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 CDH7Q9ULB5 785 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 KIAA1257Q9ULG3 409 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 MAGED2Q9UNF1 606 aaPredicted RBP17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 GREB1Q4ZG55 1949 aa17.54■□□□□ 0.4
CCDC28A-202ENST00000611852 FGF19O95750 216 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 FAM200BP0CF97 657 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 VDRP11473 427 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 CD19P15391 556 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 CEBPBP17676 345 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 GABRR2P28476 465 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 KLK7P49862 253 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 SGO2Q562F6 1265 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 CLEC20AQ6ZU45 233 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 DENND5BQ6ZUT9 1274 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 NPAS3Q8IXF0 933 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 ZDHHC14Q8IZN3 488 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms