RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 CPA6Q8N4T0 437 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 FRMD1Q8N878 549 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 ARL14EPQ8N8R7 260 aaPredicted RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 SH3RF2Q8TEC5 729 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 DNAJC19Q96DA6 116 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 CNOT6LQ96LI5 555 aaKnown RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 FNBP1Q96RU3 617 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 RNF38Q9H0F5 515 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 TMEM74BQ9NUR3 256 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 DDX43Q9NXZ2 648 aaKnown RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 UXTQ9UBK9 157 aaPredicted RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 EVLQ9UI08 416 aaPredicted RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 MMP17Q9ULZ9 603 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 ARHGAP26Q9UNA1 814 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 MAGED2Q9UNF1 606 aaPredicted RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 AGAP1Q9UPQ3 857 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 NBEAQ8NFP9 2946 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 ASCC3Q8N3C0 2202 aaKnown RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 TSC2P49815 1807 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 TRAV19A0A0A6YYK7 116 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 FAM221BA6H8Z2 402 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 SRRM3A6NNA2 597 aaPredicted RBP6.56□□□□□ -1.36
VRK3-220ENST00000600259 KHNYNO15037 678 aaKnown RBP6.56□□□□□ -1.36
VRK3-220ENST00000600259 IL18RAPO95256 599 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 HDCP19113 662 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 LMO2P25791 158 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 POLR2BP30876 1174 aaKnown RBP6.56□□□□□ -1.36
VRK3-220ENST00000600259 ABCD1P33897 745 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 UBA7P41226 1012 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 P2RY2P41231 377 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 PNPLA4P41247 253 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 KIR2DL1P43626 348 aaPredicted RBP6.56□□□□□ -1.36
VRK3-220ENST00000600259 SLC6A11P48066 632 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 IFNAR2P48551 515 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 USP46P62068 366 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 TSPY1Q01534 308 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 ZNF252P-AS1Q0IIN9 211 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 FOXC1Q12948 553 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 COL9A2Q14055 689 aaPredicted RBP6.56□□□□□ -1.36
VRK3-220ENST00000600259 POSTNQ15063 836 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 CRY1Q16526 586 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 MAP7D1Q3KQU3 841 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 USP39Q53GS9 565 aaKnown RBP6.56□□□□□ -1.36
VRK3-220ENST00000600259 C2orf27AQ580R0 203 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 EMC10Q5UCC4 262 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 DAB2IPQ5VWQ8 1189 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 MCTP1Q6DN14 999 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 RHBDF2Q6PJF5 856 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 PIP4P1Q86T03 277 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 BRSK2Q8IWQ3 736 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 TMEM86AQ8N2M4 240 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 CCDC33Q8N5R6 958 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 LRRC52Q8N7C0 313 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 KIAA1958Q8N8K9 716 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 MDGA1Q8NFP4 955 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 SPATA18Q8TC71 538 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 KBTBD7Q8WVZ9 684 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 ATP2A3Q93084 1043 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 ACDQ96AP0 544 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 CALML4Q96GE6 196 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 FUBP3Q96I24 572 aaKnown RBP eCLIP6.56□□□□□ -1.36
VRK3-220ENST00000600259 CDK5RAP3Q96JB5 506 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 SPATA17Q96L03 361 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 SCNM1Q9BWG6 230 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 TTLL2Q9BWV7 592 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 ADAM33Q9BZ11 813 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 TPSD1Q9BZJ3 242 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 TMEM9BQ9NQ34 198 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 CRTAC1Q9NQ79 661 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 MBD1Q9UIS9 605 aaPredicted RBP6.56□□□□□ -1.36
VRK3-220ENST00000600259 HCN2Q9UL51 889 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 NME7Q9Y5B8 376 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 DENND4CQ5VZ89 1909 aa6.56□□□□□ -1.36
VRK3-220ENST00000600259 ZNF840PA6NDX5 716 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 MYMKA6NI61 221 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 UPK3BL1B0FP48 263 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 UPK3BL2E5RIL1 263 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 SGK1O00141 431 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 TAF4O00268 1085 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 LEFTY2O00292 366 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 TNFRSF10BO14763 440 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 HUS1O60921 280 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 ADAM23O75077 832 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 OLFM2O95897 454 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 CYP17A1P05093 508 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 ITGB3P05106 788 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 PFKLP17858 780 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 GBP1P32455 592 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 LONP1P36776 959 aaKnown RBP6.55□□□□□ -1.36
VRK3-220ENST00000600259 PTGER3P43115 390 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 LHX1P48742 406 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 CASP5P51878 434 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 SLC7A9P82251 487 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 MRPS21P82921 87 aaKnown RBP6.55□□□□□ -1.36
VRK3-220ENST00000600259 TFAMQ00059 246 aaKnown RBP6.55□□□□□ -1.36
VRK3-220ENST00000600259 NR1H3Q13133 447 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 PSMD2Q13200 908 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 SEMA3BQ13214 749 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 DHCR24Q15392 516 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 PEAR1Q5VY43 1037 aaPredicted RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms