RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LEMD2Q8NC56 503 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 CCDC150Q8NCX0 1101 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 RSAD2Q8WXG1 361 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 ACSF2Q96CM8 615 aaPredicted RBP20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 TRMT2BQ96GJ1 504 aaKnown RBP20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 SMOQ99835 787 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 TUBGCP2Q9BSJ2 902 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 NT5C1AQ9BXI3 368 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 SMOC2Q9H3U7 446 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 CSNK1G1Q9HCP0 422 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 SIX2Q9NPC8 291 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 FANCLQ9NW38 375 aa20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 ZFP37Q9Y6Q3 630 aaPredicted RBP20.74■□□□□ 0.91
SHKBP1-221ENST00000599833 A0A1W2PRU2 124 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 F8VP50 259 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 TNFRSF10BO14763 440 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 MYL4P12829 197 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 SLC9A1P19634 815 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 EEF1GP26641 437 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 RPL10AP62906 217 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 PTPN21Q16825 1174 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 TPD52L1Q16890 204 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 ANO6Q4KMQ2 910 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 STXBP5Q5T5C0 1151 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 TRIM65Q6PJ69 517 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 ITIH5Q86UX2 942 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 ST13P5Q8NFI4 369 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 SLC2A14Q8TDB8 520 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 FGF14Q92915 247 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 CEP295NLQ96MC4 621 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 KCNK16Q96T55 309 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 BPIFA3Q9BQP9 254 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 RPP25Q9BUL9 199 aaKnown RBP20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 TTLL2Q9BWV7 592 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 KCNK12Q9HB15 430 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 FAM49BQ9NUQ9 324 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 GCNT4Q9P109 453 aa20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 AJAP1Q9UKB5 411 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 KIF26AQ9ULI4 1882 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-221ENST00000599833 RNF225M0QZC1 329 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 ZNF197O14709 1029 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 CLSTN1O94985 981 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 GABRR2P28476 465 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 MTIF2P46199 727 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 ZNF132P52740 706 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 MYL5Q02045 173 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 GCNT1Q02742 428 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 KCNMA1Q12791 1236 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 TEAD2Q15562 447 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 VWA3BQ502W6 1294 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 ZNF394Q53GI3 561 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 PPP1R26Q5T8A7 1209 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 CYP4A22Q5TCH4 519 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 PARM1Q6UWI2 310 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 FAM114A1Q8IWE2 563 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 SCN4BQ8IWT1 228 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 NT5C1BQ96P26 610 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 HNRNPABQ99729 332 aaKnown RBP20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 CRACR2AQ9BSW2 395 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 NDST4Q9H3R1 872 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 EPHX3Q9H6B9 360 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 GDE1Q9NZC3 331 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 IL37Q9NZH6 218 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 CNTN6Q9UQ52 1028 aa20.72■□□□□ 0.91
SHKBP1-221ENST00000599833 COL4A2P08572 1712 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 SYCE3A1L190 88 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 HHLA1C9JL84 531 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 CSH1P0DML2 217 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 CSH2P0DML3 217 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 TBXAS1P24557 533 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 PON1P27169 355 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 VEPH1Q14D04 833 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 GJB7Q6PEY0 223 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 RRAGAQ7L523 313 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 DHX40Q8IX18 779 aaKnown RBP20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 TTC39CQ8N584 583 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 MCRS1Q96EZ8 462 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 TMEM176AQ96HP8 235 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 ZSWIM1Q9BR11 485 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 C11orf16Q9NQ32 467 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 NUMBLQ9Y6R0 609 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 WDFY4Q6ZS81 3184 aa20.71■□□□□ 0.91
SHKBP1-221ENST00000599833 TRIM66O15016 1216 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 DCXO43602 365 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 PTMSP20962 102 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 GRIK1P39086 918 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 CYP4F8P98187 520 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 KRT31Q15323 416 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 FAM78AQ5JUQ0 283 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 ARHGAP17Q68EM7 881 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 CLEC20AQ6ZU45 233 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 PPM1KQ8N3J5 372 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 FAM200AQ8TCP9 573 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 RSPRY1Q96DX4 576 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 SMARCD1Q96GM5 515 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 ASB16Q96NS5 453 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 TRPV4Q9HBA0 871 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 KRT82Q9NSB4 513 aa20.7■□□□□ 0.9
SHKBP1-221ENST00000599833 FAM92AA1XBS5 289 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 AP1G2O75843 785 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms