RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 FAM83CQ9BQN1 747 aa20.04■□□□□ 0.8
PNKP-213ENST00000599543 GMEB2Q9UKD1 530 aa20.04■□□□□ 0.8
PNKP-213ENST00000599543 CDH9Q9ULB4 789 aa20.04■□□□□ 0.8
PNKP-213ENST00000599543 A0A1W2PQ27 194 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 A0A1W2PQ64 194 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 A0A1W2PQD8 194 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 CLIC2O15247 247 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 TGFB1I1O43294 461 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 GADD45BO75293 160 aaPredicted RBP20.03■□□□□ 0.8
PNKP-213ENST00000599543 TADA3O75528 432 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 CUL4BQ13620 913 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 ZNF268Q14587 947 aaPredicted RBP20.03■□□□□ 0.8
PNKP-213ENST00000599543 WDR44Q5JSH3 913 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 TRIM68Q6AZZ1 485 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 FAM171BQ6P995 826 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 TRAPPC11Q7Z392 1133 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 LIMS2Q7Z4I7 341 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 SYNPOQ8N3V7 929 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 XXYLT1Q8NBI6 393 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 SCFD1Q8WVM8 642 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 MYLPFQ96A32 169 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 CCDC127Q96BQ5 260 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 CGRRF1Q99675 332 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 EBF3Q9H4W6 596 aa20.03■□□□□ 0.8
PNKP-213ENST00000599543 MAGEC2Q9UBF1 373 aaPredicted RBP20.03■□□□□ 0.8
PNKP-213ENST00000599543 RALGAPA1Q6GYQ0 2036 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 TRAV19A0A0A6YYK7 116 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 GOLGA6L4A6NEF3 574 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 ATP2C2O75185 946 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 PAPSS2O95340 614 aaPredicted RBP20.02■□□□□ 0.8
PNKP-213ENST00000599543 CKMP06732 381 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 PRR29P0C7W0 189 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 WARSP23381 471 aaKnown RBP20.02■□□□□ 0.8
PNKP-213ENST00000599543 LMO2P25791 158 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 MAGEA11P43364 429 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 CYP24A1Q07973 514 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 EHHADHQ08426 723 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 RUNX3Q13761 415 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 PSMD6Q15008 389 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 VSTM1Q6UX27 236 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 PRR23BQ6ZRT6 265 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 TTC16Q8NEE8 873 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 PAGE5Q96GU1 130 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 SLC39A2Q9NP94 309 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 HPS4Q9NQG7 708 aa20.02■□□□□ 0.8
PNKP-213ENST00000599543 SPAG17Q6Q759 2223 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 FAM237AA0A1B0GTK4 181 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 PDGFRBP09619 1106 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 USP17L7P0C7H9 530 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 SLFN14P0C7P3 912 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 GRIK1P39086 918 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 TNNC1P63316 161 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 AMPD2Q01433 879 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 CYP27A1Q02318 531 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 FAM160A1Q05DH4 1040 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 GRSF1Q12849 480 aaKnown RBP eCLIP20.01■□□□□ 0.79
PNKP-213ENST00000599543 PUM1Q14671 1186 aaKnown RBP eCLIP20.01■□□□□ 0.79
PNKP-213ENST00000599543 LPAL2Q16609 132 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 DGLUCYQ7Z3D6 616 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 SNX25Q9H3E2 840 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 CRTAC1Q9NQ79 661 aa20.01■□□□□ 0.79
PNKP-213ENST00000599543 CGNQ9P2M7 1197 aaKnown RBP20.01■□□□□ 0.79
PNKP-213ENST00000599543 PVALEFA0A1B0GWK0 134 aa20■□□□□ 0.79
PNKP-213ENST00000599543 CHURC1-FNTBB4DL54 471 aa20■□□□□ 0.79
PNKP-213ENST00000599543 K7ESF4 209 aa20■□□□□ 0.79
PNKP-213ENST00000599543 BDNFP23560 247 aa20■□□□□ 0.79
PNKP-213ENST00000599543 ANXA13P27216 316 aa20■□□□□ 0.79
PNKP-213ENST00000599543 FNTBP49356 437 aa20■□□□□ 0.79
PNKP-213ENST00000599543 KCNB1Q14721 858 aa20■□□□□ 0.79
PNKP-213ENST00000599543 MTF1Q14872 753 aa20■□□□□ 0.79
PNKP-213ENST00000599543 PDGFRLQ15198 375 aa20■□□□□ 0.79
PNKP-213ENST00000599543 BMT2Q1RMZ1 405 aa20■□□□□ 0.79
PNKP-213ENST00000599543 HEATR6Q6AI08 1181 aaKnown RBP20■□□□□ 0.79
PNKP-213ENST00000599543 LAIR1Q6GTX8 287 aa20■□□□□ 0.79
PNKP-213ENST00000599543 LONP2Q86WA8 852 aa20■□□□□ 0.79
PNKP-213ENST00000599543 RIN3Q8TB24 985 aa20■□□□□ 0.79
PNKP-213ENST00000599543 SPATA17Q96L03 361 aa20■□□□□ 0.79
PNKP-213ENST00000599543 CEP295NLQ96MC4 621 aa20■□□□□ 0.79
PNKP-213ENST00000599543 USP18Q9UMW8 372 aa20■□□□□ 0.79
PNKP-213ENST00000599543 OTOL1A6NHN0 477 aaPredicted RBP19.99■□□□□ 0.79
PNKP-213ENST00000599543 TRIM66O15016 1216 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 TACC1O75410 805 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 ZNF202O95125 648 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 CST3P01034 146 aaPredicted RBP19.99■□□□□ 0.79
PNKP-213ENST00000599543 ARSAP15289 507 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 CNR2P34972 360 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 GNL1P36915 607 aaPredicted RBP19.99■□□□□ 0.79
PNKP-213ENST00000599543 PDE6CP51160 858 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 DMWDQ09019 674 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 TRPC3Q13507 836 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 SIM2Q14190 667 aaPredicted RBP19.99■□□□□ 0.79
PNKP-213ENST00000599543 ZNF77Q15935 545 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 KNOP1Q1ED39 458 aaKnown RBP19.99■□□□□ 0.79
PNKP-213ENST00000599543 WDR72Q3MJ13 1102 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 TMEM196Q5HYL7 178 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 C12orf56Q8IXR9 622 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 CPA6Q8N4T0 437 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 OR6B3Q8NGW1 331 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 GOLGA5Q8TBA6 731 aa19.99■□□□□ 0.79
PNKP-213ENST00000599543 MYCBPAPQ8TBZ2 947 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms