RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PKDCCQ504Y2 493 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 CXCL17Q6UXB2 119 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 KDM7AQ6ZMT4 941 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 C7orf31Q8N865 590 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 SMG8Q8ND04 991 aaKnown RBP15.23■□□□□ 0.03
VRK3-217ENST00000599538 OR6B3Q8NGW1 331 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 SNF8Q96H20 258 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 PEBP4Q96S96 227 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 DDX23Q9BUQ8 820 aaKnown RBP15.23■□□□□ 0.03
VRK3-217ENST00000599538 WDR35Q9P2L0 1181 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 CACNG4Q9UBN1 327 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 NOVA2Q9UNW9 492 aaKnown RBP15.23■□□□□ 0.03
VRK3-217ENST00000599538 Q9Y3F1 56 aa15.23■□□□□ 0.03
VRK3-217ENST00000599538 RIPK2O43353 540 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 TJP3O95049 919 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 PDGFRBP09619 1106 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 NUDT17P0C025 328 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 AKR1A1P14550 325 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 LMO2P25791 158 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 KLRC2P26717 231 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 MIPP30301 263 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 GBP1P32455 592 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 CRYBB1P53674 252 aaPredicted RBP15.22■□□□□ 0.03
VRK3-217ENST00000599538 IFFO1Q0D2I5 559 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 TRIM32Q13049 653 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 SPDYCQ5MJ68 293 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 SMYD5Q6GMV2 418 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 OR6B2Q6IFH4 312 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 FAM228AQ86W67 206 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 GRK7Q8WTQ7 553 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 KBTBD7Q8WVZ9 684 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 SOCS4Q8WXH5 440 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 TRIB2Q92519 343 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 IPPQ9Y573 584 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 SMIM23A6NLE4 172 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 PIRO00625 290 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 RARGP13631 454 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 ATF2P15336 505 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 ITIH2P19823 946 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 BYSLQ13895 437 aaKnown RBP15.22■□□□□ 0.03
VRK3-217ENST00000599538 CCDC142Q17RM4 750 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 ODF2Q5BJF6 829 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 GNASQ5JWF2 1037 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 DENND2CQ68D51 928 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 LEKR1Q6ZMV7 388 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 POLNQ7Z5Q5 900 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 LRRC52Q8N7C0 313 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 B3GNT5Q9BYG0 378 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 OSBPL7Q9BZF2 842 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 CDC42EP4Q9H3Q1 356 aaKnown RBP15.22■□□□□ 0.03
VRK3-217ENST00000599538 HOMER3Q9NSC5 361 aa15.22■□□□□ 0.03
VRK3-217ENST00000599538 DDX56Q9NY93 547 aaKnown RBP15.22■□□□□ 0.03
VRK3-217ENST00000599538 UBQLN1Q9UMX0 589 aaKnown RBP15.22■□□□□ 0.03
VRK3-217ENST00000599538 KDELR1P24390 212 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 AXLP30530 894 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 PCBP1Q15365 356 aaKnown RBP eCLIP15.21■□□□□ 0.03
VRK3-217ENST00000599538 FBXO47Q5MNV8 452 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 FAM182AQ5T1J6 154 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 SYDE1Q6ZW31 735 aaPredicted RBP15.21■□□□□ 0.03
VRK3-217ENST00000599538 CYP4V2Q6ZWL3 525 aaPredicted RBP15.21■□□□□ 0.03
VRK3-217ENST00000599538 ZNF365Q70YC5 407 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 GSTA5Q7RTV2 222 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 APBB1IPQ7Z5R6 666 aaPredicted RBP15.21■□□□□ 0.03
VRK3-217ENST00000599538 RXFP2Q8WXD0 754 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 KHSRPQ92945 711 aaKnown RBP eCLIP15.21■□□□□ 0.03
VRK3-217ENST00000599538 ZFP42Q96MM3 310 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 TMEM121Q9BTD3 319 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 FEZ2Q9UHY8 353 aaPredicted RBP15.21■□□□□ 0.03
VRK3-217ENST00000599538 ZNF148Q9UQR1 794 aa15.21■□□□□ 0.03
VRK3-217ENST00000599538 TLDC2A0PJX2 215 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 C2CD4BA6NLJ0 364 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 A8MXQ7 604 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 CCDC130P13994 396 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 PTPN7P35236 360 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 CETN2P41208 172 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 AFF1P51825 1210 aaKnown RBP15.2■□□□□ 0.02
VRK3-217ENST00000599538 COPS2P61201 443 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 MAGOHP61326 146 aaKnown RBP15.2■□□□□ 0.02
VRK3-217ENST00000599538 PDE4CQ08493 712 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 OASLQ15646 514 aaKnown RBP15.2■□□□□ 0.02
VRK3-217ENST00000599538 CDO1Q16878 200 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 XKR4Q5GH76 650 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 EMC10Q5UCC4 262 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 SCUBE3Q8IX30 993 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 EPS8L3Q8TE67 593 aaKnown RBP15.2■□□□□ 0.02
VRK3-217ENST00000599538 IPO4Q8TEX9 1081 aaKnown RBP15.2■□□□□ 0.02
VRK3-217ENST00000599538 SLC35F5Q8WV83 523 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 HSPH1Q92598 858 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 CFAP57Q96MR6 1250 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 KATNAL1Q9BW62 490 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 ADAM7Q9H2U9 754 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 LCMT1Q9UIC8 334 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 ANAPC5Q9UJX4 755 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 KIAA1257Q9ULG3 409 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 USP18Q9UMW8 372 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 KPNA7A9QM74 516 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 CST8O60676 142 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 DUSP11O75319 330 aaKnown RBP15.2■□□□□ 0.02
VRK3-217ENST00000599538 RPS6KA5O75582 802 aa15.2■□□□□ 0.02
VRK3-217ENST00000599538 ACSL3O95573 720 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms