RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	FAM160A1	Q05DH4	1040 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	CSRP2	Q16527	193 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	DUOXA2	Q1HG44	320 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	STXBP4	Q6ZWJ1	553 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	LIMS2	Q7Z4I7	341 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	KBTBD6	Q86V97	674 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	CPA6	Q8N4T0	437 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	RDH13	Q8NBN7	331 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	NETO1	Q8TDF5	533 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	SH3RF2	Q8TEC5	729 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	GAB3	Q8WWW8	586 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	EZH1	Q92800	747 aa	Predicted RBP	11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	FUBP3	Q96I24	572 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	HHIP	Q96QV1	700 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	MMS19	Q96T76	1030 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	P2RY13	Q9BPV8	354 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	ECT2	Q9H8V3	914 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	KBTBD4	Q9NVX7	518 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	GCNT4	Q9P109	453 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	SLC8A2	Q9UPR5	921 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	NME7	Q9Y5B8	376 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776		K7ELQ4	463 aa	Predicted RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	SLC30A4	O14863	429 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	KIAA0391	O15091	583 aa	Known RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	EIF3D	O15371	548 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	TGFB1I1	O43294	461 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	RPP40	O75818	363 aa	Known RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	DLAT	P10515	647 aa	Known RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	DRD1	P21728	446 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	WARS	P23381	471 aa	Known RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	CASP1	P29466	404 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	GRIK1	P39086	918 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	IFNAR2	P48551	515 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	CYP2J2	P51589	502 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	USP46	P62068	366 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	KCNB1	Q14721	858 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	SF3A2	Q15428	464 aa	Known RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	SNRNP35	Q16560	246 aa	Known RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	EML3	Q32P44	896 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	FAM26F	Q5R3K3	315 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	SHC4	Q6S5L8	630 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	C4orf50	Q6ZRC1	276 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	EPM2AIP1	Q7L775	607 aa	Predicted RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	DPH6	Q7L8W6	267 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	TRAPPC11	Q7Z392	1133 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	WDR49	Q8IV35	697 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	NELFCD	Q8IXH7	590 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	RPLP0P6	Q8NHW5	317 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	OSCP1	Q8WVF1	389 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	ATP2A3	Q93084	1043 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	CCDC127	Q96BQ5	260 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	PCED1B	Q96HM7	432 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	CNTNAP3B	Q96NU0	1288 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	MRPL45	Q9BRJ2	306 aa	Known RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	CNTNAP3	Q9BZ76	1288 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	ARRDC1-AS1	Q9H2J1	176 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	AGPAT3	Q9NRZ7	376 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	MAGEC2	Q9UBF1	373 aa	Predicted RBP	11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	CDH9	Q9ULB4	789 aa		11.26	□□□□□ -0.61
LSM4-205	ENST00000597776	LAMA1	P25391	3075 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	SCAMP3	O14828	347 aa	Known RBP	11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CLIC2	O15247	247 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	ATG13	O75143	517 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	PPP6R2	O75170	966 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CST3	P01034	146 aa	Predicted RBP	11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CCDC192	P0DO97	292 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	HDC	P19113	662 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	KCNA4	P22459	653 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CACNA2D1	P54289	1103 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	ZXDB	P98169	803 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	AMPD2	Q01433	879 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	SURF1	Q15526	300 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	MDH1B	Q5I0G3	518 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	PPM1J	Q5JR12	505 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	VSTM1	Q6UX27	236 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CACNA2D4	Q7Z3S7	1137 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	FSIP1	Q8NA03	581 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	ZNF507	Q8TCN5	953 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CD101	Q93033	1021 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	SPATA17	Q96L03	361 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CGRRF1	Q99675	332 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	LRRC27	Q9C0I9	530 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	GZF1	Q9H116	711 aa	Predicted RBP	11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	BLZF1	Q9H2G9	400 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	LINC00597	Q9H2U6	94 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	CUEDC2	Q9H467	287 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	DPEP3	Q9H4B8	488 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	SMOC1	Q9H4F8	434 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	KIAA1586	Q9HCI6	787 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	RXFP3	Q9NSD7	469 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	TMEM30A	Q9NV96	361 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	ARHGAP26	Q9UNA1	814 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	ANAPC1	Q9H1A4	1944 aa		11.25	□□□□□ -0.61
LSM4-205	ENST00000597776	ATG2B	Q96BY7	2078 aa		11.24	□□□□□ -0.61

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