RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TAF4BQ92750 862 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 DNASE1L2Q92874 299 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 E2F7Q96AV8 911 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 RSPRY1Q96DX4 576 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 TRMT2BQ96GJ1 504 aaKnown RBP16.12■□□□□ 0.17
TRIM28-205ENST00000595028 PCED1BQ96HM7 432 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 TSG101Q99816 390 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 DPEP3Q9H4B8 488 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 MAGEC2Q9UBF1 373 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-205ENST00000595028 ANAPC1Q9H1A4 1944 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 SLC38A8A6NNN8 435 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 A8MXQ7 604 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 CETN3O15182 167 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 TADA3O75528 432 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 HLA-DRAP01903 254 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 EPB41P11171 864 aaKnown RBP16.11■□□□□ 0.17
TRIM28-205ENST00000595028 P4HA1P13674 534 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 PSMC3P17980 439 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 GCLMP48507 274 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 MCCD1P59942 119 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-205ENST00000595028 CYP27A1Q02318 531 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 PRKCQQ04759 706 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 PPP3CAQ08209 521 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 SGSM1Q2NKQ1 1148 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 TMEM150AQ86TG1 271 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 ZC3H3Q8IXZ2 948 aaKnown RBP16.11■□□□□ 0.17
TRIM28-205ENST00000595028 DTWD2Q8NBA8 298 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 ELMO3Q96BJ8 720 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 SHDQ96IW2 340 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 MYRFLQ96LU7 910 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 TRMT61BQ9BVS5 477 aaKnown RBP16.11■□□□□ 0.17
TRIM28-205ENST00000595028 SDCBP2Q9H190 292 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 TASP1Q9H6P5 420 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 BRD9Q9H8M2 597 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 UXTQ9UBK9 157 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-205ENST00000595028 ZMYM5Q9UJ78 669 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 MAN1B1Q9UKM7 699 aa16.11■□□□□ 0.17
TRIM28-205ENST00000595028 MAGED2Q9UNF1 606 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-205ENST00000595028 MAP1BP46821 2468 aaKnown RBP16.1■□□□□ 0.17
TRIM28-205ENST00000595028 HEPACAM2A8MVW5 462 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 SLC16A3O15427 465 aaKnown RBP16.1■□□□□ 0.17
TRIM28-205ENST00000595028 PRAMEF12O95522 483 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 F11P03951 625 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 PTPN1P18031 435 aaKnown RBP16.1■□□□□ 0.17
TRIM28-205ENST00000595028 BDNFP23560 247 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 WEE1P30291 646 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 ASPAP45381 313 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 PMS1P54277 932 aaKnown RBP16.1■□□□□ 0.17
TRIM28-205ENST00000595028 STARD6P59095 220 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 LRRC63Q05C16 580 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 SLC44A4Q53GD3 710 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 SPOPLQ6IQ16 392 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 ARID3BQ8IVW6 561 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-205ENST00000595028 MFSD6LQ8IWD5 586 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 B3GALNT2Q8NCR0 500 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 TAS1R2Q8TE23 839 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 EEF2KMTQ96G04 330 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 DDX23Q9BUQ8 820 aaKnown RBP16.1■□□□□ 0.17
TRIM28-205ENST00000595028 IMPG2Q9BZV3 1241 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 ELOVL4Q9GZR5 314 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 SEMA4AQ9H3S1 761 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 TMEM8AQ9HCN3 771 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 DLL3Q9NYJ7 618 aa16.1■□□□□ 0.17
TRIM28-205ENST00000595028 HELZP42694 1942 aaKnown RBP16.09■□□□□ 0.17
TRIM28-205ENST00000595028 TRIM49BA6NDI0 452 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 STK25O00506 426 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 PSMA7O14818 248 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 TRIM66O15016 1216 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 DDX6P26196 483 aaKnown RBP eCLIP16.09■□□□□ 0.173e-6■■□□□ 13.5
TRIM28-205ENST00000595028 ANXA13P27216 316 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 GDI1P31150 447 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 GTF2H1P32780 548 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 GRIK1P39086 918 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 MXI1P50539 228 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 CDH8P55286 799 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 NOP14P78316 857 aaKnown RBP16.09■□□□□ 0.17
TRIM28-205ENST00000595028 FCHO2Q0JRZ9 810 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 STIM1Q13586 685 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 MRPS31Q92665 395 aaKnown RBP16.09■□□□□ 0.17
TRIM28-205ENST00000595028 IRF7Q92985 503 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 SPATA17Q96L03 361 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 CEP295NLQ96MC4 621 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 FOXQ1Q9C009 403 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 ZNF518BQ9C0D4 1074 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 MMRN2Q9H8L6 949 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 OBP2AQ9NY56 170 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 R4GN57 208 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 PATJQ8NI35 1801 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 CHD8Q9HCK8 2581 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 BAHCC1Q9P281 2608 aa16.09■□□□□ 0.17
TRIM28-205ENST00000595028 MYH10P35580 1976 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 SOBPA7XYQ1 873 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 ARNTLO00327 626 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 CCNE1P24864 410 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 PPP1R2P41236 205 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 UBE2HP62256 183 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 FKBP3Q00688 224 aaKnown RBP16.08■□□□□ 0.16
TRIM28-205ENST00000595028 KRT39Q6A163 491 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 ANKRD40Q6AI12 368 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 TPRG1Q6ZUI0 275 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms