RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 BTBD9Q96Q07 612 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 TMEM47Q9BQJ4 181 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 PPM1HQ9ULR3 514 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 MYH6P13533 1939 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 A0A087WXM4 84 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 RGL2O15211 777 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 KLHL41O60662 606 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 KCNA4P22459 653 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 SLC1A1P43005 524 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 GCLMP48507 274 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 ACTR3P61158 418 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 CENPCQ03188 943 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 TBC1D10BQ4KMP7 808 aaPredicted RBP12.81□□□□□ -0.36
LIG1-207ENST00000594759 CHADLQ6NUI6 762 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 RNF19BQ6ZMZ0 732 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 SLFN12Q8IYM2 578 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 CYGBQ8WWM9 190 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 CCDC90BQ9GZT6 254 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 EHMT1Q9H9B1 1298 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 DDX56Q9NY93 547 aaKnown RBP12.81□□□□□ -0.36
LIG1-207ENST00000594759 EXOC7Q9UPT5 735 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 WDR64B1ANS9 1081 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 AKAP10O43572 662 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 APOA1P02647 267 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 GAP43P17677 238 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 FMO5P49326 533 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 ACADVLP49748 655 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 VCPP55072 806 aaKnown RBP12.81□□□□□ -0.36
LIG1-207ENST00000594759 MRPS22P82650 360 aaKnown RBP12.81□□□□□ -0.36
LIG1-207ENST00000594759 KRT72Q14CN4 511 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 NRF1Q16656 503 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 SLFN13Q68D06 897 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 SAPCD2Q86UD0 394 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 ERI1Q8IV48 349 aaKnown RBP12.81□□□□□ -0.36
LIG1-207ENST00000594759 TMA16Q96EY4 203 aaKnown RBP12.81□□□□□ -0.36
LIG1-207ENST00000594759 CSRNP1Q96S65 589 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 HAPLN3Q96S86 360 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.81□□□□□ -0.36
LIG1-207ENST00000594759 FAIMQ9NVQ4 179 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 KCNK4Q9NYG8 393 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 ATF5Q9Y2D1 282 aaPredicted RBP12.81□□□□□ -0.36
LIG1-207ENST00000594759 PCDHA1Q9Y5I3 950 aa12.81□□□□□ -0.36
LIG1-207ENST00000594759 CAMTA1Q9Y6Y1 1673 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 GOLGA8QA0A0J9YX86 632 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 GOLGA8OA6NCC3 632 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 GOLGA8NF8WBI6 632 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 PI4K2BG5E9Z4 385 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 MFN2O95140 757 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 CAPN1P07384 714 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 MARCKSL1P49006 195 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 MAPK10P53779 464 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 SULT2A1Q06520 285 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 RTKN2Q8IZC4 609 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 AFAP1L2Q8N4X5 818 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 TERB1Q8NA31 727 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 SUN5Q8TC36 379 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 ZC3H15Q8WU90 426 aaKnown RBP12.8□□□□□ -0.36
LIG1-207ENST00000594759 SCFD1Q8WVM8 642 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 ZFYVE19Q96K21 471 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 MRPL40Q9NQ50 206 aaKnown RBP12.8□□□□□ -0.36
LIG1-207ENST00000594759 SNX13Q9Y5W8 968 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 SNX5Q9Y5X3 404 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 C2orf71A6NGG8 1288 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 AP3B1O00203 1094 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 PIK3CDO00329 1044 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 DGKIO75912 1065 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 STAT3P40763 770 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 PRKCIP41743 596 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 BAG6P46379 1132 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 SERPINB10P48595 397 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 CASP4P49662 377 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 GRM4Q14833 912 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 HADHQ16836 314 aaKnown RBP12.8□□□□□ -0.36
LIG1-207ENST00000594759 C11orf63Q6NUN7 778 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 TMEM214Q6NUQ4 689 aaKnown RBP12.8□□□□□ -0.36
LIG1-207ENST00000594759 TTC27Q6P3X3 843 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 NIM1KQ8IY84 436 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 FLAD1Q8NFF5 587 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 FAM136AQ96C01 138 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 DCUN1D1Q96GG9 259 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 CHST7Q9NS84 486 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 C20orf96Q9NUD7 363 aaPredicted RBP12.8□□□□□ -0.36
LIG1-207ENST00000594759 DNAJB4Q9UDY4 337 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 PIK3C2AO00443 1686 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 CACNA1FO60840 1977 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 MYH7BA7E2Y1 1941 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 TRIM49D1C9J1S8 452 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 M0R3G1 203 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 WEE2P0C1S8 567 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 ENTPD1P49961 510 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 UBXN2AP68543 259 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 GJC2Q5T442 439 aaPredicted RBP12.8□□□□□ -0.36
LIG1-207ENST00000594759 CDR2LQ86X02 465 aaPredicted RBP12.8□□□□□ -0.36
LIG1-207ENST00000594759 EFCAB3Q8N7B9 438 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 LRRC4CQ9HCJ2 640 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 KCNMB3Q9NPA1 279 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 KRT82Q9NSB4 513 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 C1orf112Q9NSG2 853 aa12.8□□□□□ -0.36
LIG1-207ENST00000594759 PEAK1Q9H792 1746 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms