RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 HIST1H2AGP0C0S8 130 aaPredicted RBP13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 FDPSP14324 419 aaKnown RBP13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 HIST1H2ADP20671 130 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 ACO1P21399 889 aaKnown RBP13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 MAP4P27816 1152 aaKnown RBP13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 NPTX2P47972 431 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 IRAK1P51617 712 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 TWF1Q12792 350 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 PTGISQ16647 500 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 SLC30A9Q6PML9 568 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 NYAP1Q6ZVC0 841 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 RIOX2Q8IUF8 465 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 ANKMY2Q8IV38 441 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 DNAJC9Q8WXX5 260 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 IL17RAQ96F46 866 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 HIST1H2AHQ96KK5 128 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 MCEEQ96PE7 176 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 HIST1H2AJQ99878 128 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 SYT17Q9BSW7 474 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 H2AFJQ9BTM1 129 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 RUSC1Q9BVN2 902 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 EMILIN2Q9BXX0 1053 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 IRX2Q9BZI1 471 aaPredicted RBP13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 SENP6Q9GZR1 1112 aaPredicted RBP13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 MSRAQ9UJ68 235 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 GLTPD2A6NH11 291 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 DAB1O75553 588 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 GHRP10912 638 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 CASP7P55210 303 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 NIPA1Q7RTP0 329 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 GPRC5CQ9NQ84 441 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 TBC1D23Q9NUY8 699 aa13.85□□□□□ -0.19
SMARCA4-216ENST00000591545 RAD51CO43502 376 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 KDM1AO60341 852 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 RNASEH1O60930 286 aaKnown RBP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 SRP72O76094 671 aaKnown RBP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 ATICP31939 592 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 SPRP35270 261 aaPredicted RBP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 TRPC1P48995 793 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 KRT72Q14CN4 511 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 PDK1Q15118 436 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 CCDC92Q53HC0 331 aaPredicted RBP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 ERP27Q96DN0 273 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 MS4A14Q96JA4 679 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 TINF2Q9BSI4 451 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 NPHS2Q9NP85 383 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 FNTAP49354 379 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 IKBKEQ14164 716 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 SEC23AQ15436 765 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 SERPINB12Q96P63 405 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 FRMD8P1Q9BZ68 369 aaPredicted RBP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 AIPL1Q9NZN9 384 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 IRF6O14896 467 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 MTSS1O43312 755 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 GRAP2O75791 330 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 KCNA3P22001 575 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 AXLP30530 894 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 CALML6Q8TD86 181 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 ZIM3Q96PE6 472 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 RSAD1Q9HA92 442 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 CASS4Q9NQ75 786 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 SUFUQ9UMX1 484 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 TRPV2Q9Y5S1 764 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 CDY2AQ9Y6F7 541 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 CDY1Q9Y6F8 540 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 PHF20L1A8MW92 1017 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 MED24O75448 989 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 HNRNPCP07910 306 aaKnown RBP eCLIP13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 GFAPP14136 432 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 CORO7P57737 925 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 PLD1Q13393 1074 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 LONRF1Q17RB8 773 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 CATSPERGQ6ZRH7 1159 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 ADGRF2Q8IZF7 708 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 AGPAT5Q9NUQ2 364 aa13.84□□□□□ -0.19
SMARCA4-216ENST00000591545 GOLGA8TH3BQL2 631 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 SUPT3HO75486 399 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 GYPCP04921 128 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 MAGEA4P43358 317 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 LAMTOR4Q0VGL1 99 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 AASDHQ4L235 1098 aaPredicted RBP13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 SLC30A10Q6XR72 485 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 KDM7AQ6ZMT4 941 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 TMEM199Q8N511 208 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 USP33Q8TEY7 942 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 OSBPL8Q9BZF1 889 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 CARD9Q9H257 536 aa13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 XPO7Q9UIA9 1087 aaKnown RBP13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 CDV3Q9UKY7 258 aaKnown RBP13.83□□□□□ -0.19
SMARCA4-216ENST00000591545 TMEM120BA0PK00 339 aa13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 DNAJB2P25686 324 aa13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 PTK7Q13308 1070 aa13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 TTC39BQ5VTQ0 682 aaPredicted RBP13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 RRM2BQ7LG56 351 aa13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 NKX2-3Q8TAU0 364 aa13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 ANKS1AQ92625 1134 aa13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 USP13Q92995 863 aaPredicted RBP13.83□□□□□ -0.2
SMARCA4-216ENST00000591545 GRID1Q9ULK0 1009 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms