RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 OR5B17Q8NGF7 314 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 SPATA17Q96L03 361 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 CEP295NLQ96MC4 621 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 USP28Q96RU2 1077 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 MTMR12Q9C0I1 747 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 ARRDC1-AS1Q9H2J1 176 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 PCIF1Q9H4Z3 704 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 CRTAC1Q9NQ79 661 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 RXFP3Q9NSD7 469 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 PANK4Q9NVE7 773 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 EBF1Q9UH73 591 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 TNRC6BQ9UPQ9 1833 aaKnown RBP12.59□□□□□ -0.39
CLIP3-204ENST00000590559 CHD6Q8TD26 2715 aa12.59□□□□□ -0.39
CLIP3-204ENST00000590559 PLXND1Q9Y4D7 1925 aa12.58□□□□□ -0.39
CLIP3-204ENST00000590559 MYOFQ9NZM1 2061 aa12.58□□□□□ -0.39
CLIP3-204ENST00000590559 C2orf78A6NCI8 922 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 KIAA0391O15091 583 aaKnown RBP12.58□□□□□ -0.4
CLIP3-204ENST00000590559 ATP2C2O75185 946 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 USP17L7P0C7H9 530 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 PCSK1P29120 753 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 AMPD2Q01433 879 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 E2F4Q16254 413 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 GAB4Q2WGN9 574 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 EPM2AIP1Q7L775 607 aaPredicted RBP12.58□□□□□ -0.4
CLIP3-204ENST00000590559 SYT13Q7L8C5 426 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 P2RY13Q9BPV8 354 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 TTLL2Q9BWV7 592 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 CEP295Q9C0D2 2601 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 UPF2Q9HAU5 1272 aaKnown RBP12.58□□□□□ -0.4
CLIP3-204ENST00000590559 KBTBD4Q9NVX7 518 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 SLC8A2Q9UPR5 921 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 MTMR6Q9Y217 621 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 NME7Q9Y5B8 376 aa12.58□□□□□ -0.4
CLIP3-204ENST00000590559 TRAV19A0A0A6YYK7 116 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 AXIN1O15169 862 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 CHRM1P11229 460 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 IDEP14735 1019 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 PFKLP17858 780 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 WARSP23381 471 aaKnown RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 TXLNAP40222 546 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 STAT6P42226 847 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 NASPP49321 788 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 USP46P62068 366 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 SF3A2Q15428 464 aaKnown RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 PLK5Q496M5 336 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 LMBRD2Q68DH5 695 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 CC2D1AQ6P1N0 951 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 CNNM4Q6P4Q7 775 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 VSTM1Q6UX27 236 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 CBWD2Q8IUF1 395 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 SPATA2LQ8IUW3 424 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 SYCP3Q8IZU3 236 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 ABCA7Q8IZY2 2146 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 CPA6Q8N4T0 437 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 KIAA1958Q8N8K9 716 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 ARL14EPQ8N8R7 260 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 CD101Q93033 1021 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 ATP2A3Q93084 1043 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 INTS4Q96HW7 963 aaKnown RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 PANK2Q9BZ23 570 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 GZF1Q9H116 711 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 DUSP15Q9H1R2 295 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 DUS2Q9NX74 493 aaKnown RBP12.57□□□□□ -0.4
CLIP3-204ENST00000590559 CDH9Q9ULB4 789 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 ARHGAP26Q9UNA1 814 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 PCDHGA5Q9Y5G8 931 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 WNT6Q9Y6F9 365 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 THADAQ6YHU6 1953 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 AKAP13Q12802 2813 aa12.57□□□□□ -0.4
CLIP3-204ENST00000590559 TGFB1I1O43294 461 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 KRT37O76014 449 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 OLFM2O95897 454 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 KRT19P08727 400 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 TMEM191BP0C7N4 346 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 OPRD1P41143 372 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 NOP14P78316 857 aaKnown RBP12.56□□□□□ -0.4
CLIP3-204ENST00000590559 CEBPZQ03701 1054 aaKnown RBP12.56□□□□□ -0.4
CLIP3-204ENST00000590559 EHHADHQ08426 723 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 MYO1EQ12965 1108 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 SURF1Q15526 300 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 C4orf50Q6ZRC1 276 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 WDR49Q8IV35 697 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 FSIP1Q8NA03 581 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 LINC00301Q8NCQ3 95 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 RPLP0P6Q8NHW5 317 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 ZNF507Q8TCN5 953 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 SH3RF2Q8TEC5 729 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 DDX1Q92499 740 aaKnown RBP12.56□□□□□ -0.4
CLIP3-204ENST00000590559 HPS3Q969F9 1004 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 MYLPFQ96A32 169 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 HPDLQ96IR7 371 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 ANKRD36BP1Q96IX9 119 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 HHIPQ96QV1 700 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 SYT15Q9BQS2 421 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 TNMDQ9H2S6 317 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 LINC00597Q9H2U6 94 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 TRPC7Q9HCX4 862 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 TMEM30AQ9NV96 361 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 HSPBP1Q9NZL4 362 aa12.56□□□□□ -0.4
CLIP3-204ENST00000590559 MAGEC2Q9UBF1 373 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms