RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CNPY3Q9BT09 278 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 UBN1Q9NPG3 1134 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 MTRF1LQ9UGC7 380 aaKnown RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 GRIN2DO15399 1336 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 GOLGA8KD6RF30 607 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 POLR3GO15318 223 aaPredicted RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 LRCH4O75427 683 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 MYCNP04198 464 aaPredicted RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 RPL9P32969 192 aaKnown RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 GJC1P36383 396 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 ACADSBP45954 432 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 ACLYP53396 1101 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 PRMT2P55345 433 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 BST2Q10589 180 aaKnown RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 DAB2IPQ5VWQ8 1189 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 OR6B2Q6IFH4 312 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 DRICH1Q6PGQ1 229 aaPredicted RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 SPOCD1Q6ZMY3 1216 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 ADGRF2Q8IZF7 708 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 SH3GL2Q99962 352 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 FRMD8P1Q9BZ68 369 aaPredicted RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 TSPYL2Q9H2G4 693 aaPredicted RBP14.93□□□□□ -0.02
LIG3-205ENST00000585941 TJP2Q9UDY2 1190 aa14.93□□□□□ -0.02
LIG3-205ENST00000585941 E5RJQ4 531 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 AGPSO00116 658 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 SPTLC1O15269 473 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 TRPA1O75762 1119 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 SYF2O95926 243 aaKnown RBP14.92□□□□□ -0.02
LIG3-205ENST00000585941 GPD1P21695 349 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 SLC8A3P57103 927 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 CAP1Q01518 475 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 SLC25A11Q02978 314 aaKnown RBP14.92□□□□□ -0.02
LIG3-205ENST00000585941 PTK6Q13882 451 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 LRIG3Q6UXM1 1119 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 ARCQ7LC44 396 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 TTC30AQ86WT1 665 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 TMEM86AQ8N2M4 240 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 CD99L2Q8TCZ2 262 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 CCHCR1Q8TD31 782 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 C1orf54Q8WWF1 131 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 RNF25Q96BH1 459 aaPredicted RBP14.92□□□□□ -0.02
LIG3-205ENST00000585941 PGBD4Q96DM1 585 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 GLT1D1Q96MS3 346 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 TRIM31Q9BZY9 425 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 TSPYL1Q9H0U9 437 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 ZDHHC18Q9NUE0 388 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 FAM49BQ9NUQ9 324 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 WHRNQ9P202 907 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 PADI3Q9ULW8 664 aa14.92□□□□□ -0.02
LIG3-205ENST00000585941 LRRD1A4D1F6 860 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 C2CD4BA6NLJ0 364 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 DPYSL4O14531 572 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 CYB561D2O14569 222 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 RPL34P49207 117 aaKnown RBP14.91□□□□□ -0.02
LIG3-205ENST00000585941 APLP1P51693 650 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 SLC6A3Q01959 620 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 CAV1Q03135 178 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 CALCOCO2Q13137 446 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 FAM183BPQ6ZVS7 135 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 TMC3Q7Z5M5 1100 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 TTC13Q8NBP0 860 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 BBOF1Q8ND07 529 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 SPATA18Q8TC71 538 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 HSFY1Q96LI6 401 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 ZFP42Q96MM3 310 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 HEMGNQ9BXL5 484 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 GOLGA2P5Q9HBQ8 144 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 SNX24Q9Y343 169 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 NME7Q9Y5B8 376 aa14.91□□□□□ -0.02
LIG3-205ENST00000585941 hCG_1818297A0A087WSY0 165 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 A0A0U1RQF3 1178 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 ARL5CA6NH57 179 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 RNF40O75150 1001 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PPFIA2O75334 1257 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 FGFR1P11362 822 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PDGFRAP16234 1089 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 ITIH2P19823 946 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 MLH1P40692 756 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 CDKN2BP42772 138 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 RPL21P46778 160 aaKnown RBP14.9□□□□□ -0.02
LIG3-205ENST00000585941 LHX1P48742 406 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 KRT17Q04695 432 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PDE4CQ08493 712 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 DSC3Q14574 896 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 TERF2Q15554 542 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 TRIM71Q2Q1W2 868 aaKnown RBP14.9□□□□□ -0.02
LIG3-205ENST00000585941 GLIPR1L2Q4G1C9 344 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PMF1Q6P1K2 205 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 OLFML1Q6UWY5 402 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 MFSD7Q6UXD7 560 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 EMC1Q8N766 993 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 CCDC89Q8N998 374 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 SLAIN1Q8ND83 568 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 ZIM3Q96PE6 472 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 GAD1Q99259 594 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 HNRNPABQ99729 332 aaKnown RBP14.9□□□□□ -0.02
LIG3-205ENST00000585941 SEZ6LQ9BYH1 1024 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 NEUROG2Q9H2A3 272 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 AGO3Q9H9G7 860 aaKnown RBP14.9□□□□□ -0.02
LIG3-205ENST00000585941 CHST7Q9NS84 486 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms