RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF268Q14587 947 aaPredicted RBP21.9■■□□□ 1.1
SHMT1-209ENST00000582653 KMT5BQ4FZB7 885 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 SCN4BQ8IWT1 228 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 C12orf56Q8IXR9 622 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 KIAA0895Q8NCT3 520 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 SYT15Q9BQS2 421 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 MRPL45Q9BRJ2 306 aaKnown RBP21.9■■□□□ 1.1
SHMT1-209ENST00000582653 CRTAC1Q9NQ79 661 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 NME7Q9Y5B8 376 aa21.9■■□□□ 1.1
SHMT1-209ENST00000582653 K7ESF4 209 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 EXOC3O60645 756 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 TGM1P22735 817 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 WARSP23381 471 aaKnown RBP21.89■■□□□ 1.09
SHMT1-209ENST00000582653 CNR2P34972 360 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 PLEKHO2Q8TD55 490 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 MYLPFQ96A32 169 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 HPS4Q9NQG7 708 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 CGNQ9P2M7 1197 aaKnown RBP21.89■■□□□ 1.09
SHMT1-209ENST00000582653 CDH9Q9ULB4 789 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 RAB23Q9ULC3 237 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 HPSEQ9Y251 543 aa21.89■■□□□ 1.09
SHMT1-209ENST00000582653 TADA3O75528 432 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 SDHBP21912 280 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 HOXA6P31267 233 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 MAGEA11P43364 429 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 MYL6P60660 151 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 AMPD2Q01433 879 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 C4orf50Q6ZRC1 276 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 Q6ZS52 159 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 DGLUCYQ7Z3D6 616 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 LONP2Q86WA8 852 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 EBF3Q9H4W6 596 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 EXOC1Q9NV70 894 aa21.88■■□□□ 1.09
SHMT1-209ENST00000582653 MAGEC2Q9UBF1 373 aaPredicted RBP21.88■■□□□ 1.09
SHMT1-209ENST00000582653 OTOL1A6NHN0 477 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-209ENST00000582653 CHURC1-FNTBB4DL54 471 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 TRDMT1O14717 391 aaKnown RBP21.87■■□□□ 1.09
SHMT1-209ENST00000582653 HRO43593 1189 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 FAM163BP0C2L3 166 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 BDNFP23560 247 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 GNL1P36915 607 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-209ENST00000582653 FNTBP49356 437 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 KRT85P78386 507 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 CYP27A1Q02318 531 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 MAPRE1Q15691 268 aaKnown RBP21.87■■□□□ 1.09
SHMT1-209ENST00000582653 RSPO4Q2I0M5 234 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-209ENST00000582653 WDR72Q3MJ13 1102 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 TMEM196Q5HYL7 178 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 CC2D1AQ6P1N0 951 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-209ENST00000582653 VSTM1Q6UX27 236 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 FSIP1Q8NA03 581 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 RIN3Q8TB24 985 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 CEP295NLQ96MC4 621 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 CYP2S1Q96SQ9 504 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 GMEB2Q9UKD1 530 aa21.87■■□□□ 1.09
SHMT1-209ENST00000582653 DENND4CQ5VZ89 1909 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 GPR179Q6PRD1 2367 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 PRR5-ARHGAP8B1AHC4 643 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 NDUFA8P51970 172 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 ARHGAP8P85298 464 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 FAM160A1Q05DH4 1040 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 DMWDQ09019 674 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 PSMD2Q13200 908 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 TRPC3Q13507 836 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 SIM2Q14190 667 aaPredicted RBP21.86■■□□□ 1.09
SHMT1-209ENST00000582653 TRIM68Q6AZZ1 485 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 LAIR1Q6GTX8 287 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 OR6B3Q8NGW1 331 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 ELMO3Q96BJ8 720 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 SPATA17Q96L03 361 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 SLC22A12Q96S37 553 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 SNX25Q9H3E2 840 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 TRPC7Q9HCX4 862 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 DMAC2Q9NW81 257 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 C2orf42Q9NWW7 574 aa21.86■■□□□ 1.09
SHMT1-209ENST00000582653 NXF1Q9UBU9 619 aaKnown RBP21.86■■□□□ 1.09
SHMT1-209ENST00000582653 PHACTR2O75167 634 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 USP17L7P0C7H9 530 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 PRR29P0C7W0 189 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 GRIK1P39086 918 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 TNNC1P63316 161 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 GRSF1Q12849 480 aaKnown RBP eCLIP21.85■■□□□ 1.09
SHMT1-209ENST00000582653 PDGFRLQ15198 375 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 MDH1BQ5I0G3 518 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 GOLGA5Q8TBA6 731 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 MYCBPAPQ8TBZ2 947 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 PARD3BQ8TEW8 1205 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 CHFRQ96EP1 664 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 PCED1BQ96HM7 432 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 XYLT2Q9H1B5 865 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 KCTD10Q9H3F6 313 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 DPEP3Q9H4B8 488 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 USP25Q9UHP3 1055 aa21.85■■□□□ 1.09
SHMT1-209ENST00000582653 LRRIQ3A6PVS8 624 aaPredicted RBP21.84■■□□□ 1.09
SHMT1-209ENST00000582653 TACC1O75410 805 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 RPN1P04843 607 aaKnown RBP21.84■■□□□ 1.09
SHMT1-209ENST00000582653 RETP07949 1114 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 SYKP43405 635 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 GALK1P51570 392 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 DLG4P78352 724 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms