RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 HDCP19113 662 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 SCP2P22307 547 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 CYP2F1P24903 491 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 PRPHP41219 470 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 ACOT2P49753 483 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 NEK4P51957 841 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 FAM193AP78312 1265 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 BYSLQ13895 437 aaKnown RBP13.7□□□□□ -0.22
SS18-219ENST00000581570 KCNB1Q14721 858 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 SV2CQ496J9 727 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 ARSHQ5FYA8 562 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 SPDYCQ5MJ68 293 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 HYIQ5T013 277 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 LYSMD4Q5XG99 296 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 SLC39A4Q6P5W5 647 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 KCTD17Q8N5Z5 321 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 FSIP1Q8NA03 581 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 TXNDC5Q8NBS9 432 aaKnown RBP13.7□□□□□ -0.22
SS18-219ENST00000581570 LEO1Q8WVC0 666 aaPredicted RBP13.7□□□□□ -0.22
SS18-219ENST00000581570 ABCB6Q9NP58 842 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 FSCN3Q9NQT6 498 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 BCCIPQ9P287 314 aaKnown RBP eCLIP13.7□□□□□ -0.22
SS18-219ENST00000581570 PILRBQ9UKJ0 227 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 SLC6A14Q9UN76 642 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 GPSM3Q9Y4H4 160 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 NUP205Q92621 2012 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ATXN2Q99700 1313 aaKnown RBP13.69□□□□□ -0.22
SS18-219ENST00000581570 THADAQ6YHU6 1953 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 C2orf78A6NCI8 922 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 MYMKA6NI61 221 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 K7ENM7 598 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 OPHN1O60890 802 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 KLF8O95600 359 aaPredicted RBP13.69□□□□□ -0.22
SS18-219ENST00000581570 ITPKAP23677 461 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 TIE1P35590 1138 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 GFPT1Q06210 699 aaPredicted RBP13.69□□□□□ -0.22
SS18-219ENST00000581570 SCAPQ12770 1279 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 DUOXA1Q1HG43 343 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ZNF423Q2M1K9 1284 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 MAP7D1Q3KQU3 841 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 RAB44Q7Z6P3 723 aaPredicted RBP13.69□□□□□ -0.22
SS18-219ENST00000581570 PDZD3Q86UT5 571 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 CCDC83Q8IWF9 413 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 PGBD3Q8N328 593 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 MYCT1Q8N699 235 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ALLCQ8N6M5 410 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 IL17RCQ8NAC3 791 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 CEP76Q8TAP6 659 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 CDK5RAP3Q96JB5 506 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ZNF560Q96MR9 790 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ACBD6Q9BR61 282 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ODF2LQ9ULJ1 636 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ARHGAP26Q9UNA1 814 aa13.69□□□□□ -0.22
SS18-219ENST00000581570 ANKRD63C9JTQ0 380 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 SGK1O00141 431 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 ACAT1P24752 427 aaKnown RBP13.68□□□□□ -0.22
SS18-219ENST00000581570 HOXD12P35452 270 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 SLC6A11P48066 632 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 HNRNPDQ14103 355 aaKnown RBP13.68□□□□□ -0.22
SS18-219ENST00000581570 GAB4Q2WGN9 574 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 HSF5Q4G112 596 aaPredicted RBP13.68□□□□□ -0.22
SS18-219ENST00000581570 INTS6LQ5JSJ4 861 aaKnown RBP13.68□□□□□ -0.22
SS18-219ENST00000581570 EOGTQ5NDL2 527 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 EMC10Q5UCC4 262 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 PEAR1Q5VY43 1037 aaPredicted RBP13.68□□□□□ -0.22
SS18-219ENST00000581570 ADALQ6DHV7 355 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 SCN4BQ8IWT1 228 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 PDCL2Q8N4E4 241 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 FAM184AQ8NB25 1140 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 HMGB4Q8WW32 186 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 PNKPQ96T60 521 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 REEP2Q9BRK0 252 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 LLPHQ9BRT6 129 aaKnown RBP13.68□□□□□ -0.22
SS18-219ENST00000581570 DDX43Q9NXZ2 648 aaKnown RBP13.68□□□□□ -0.22
SS18-219ENST00000581570 GTF3C4Q9UKN8 822 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 PKD1L2Q7Z442 2459 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 DMXL2Q8TDJ6 3036 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 WDFY3Q8IZQ1 3526 aa13.68□□□□□ -0.22
SS18-219ENST00000581570 AKAP13Q12802 2813 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 LEFTY2O00292 366 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 TRAK2O60296 914 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 HUS1O60921 280 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 FAM13AO94988 1023 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 APODP05090 189 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 SERPINF2P08697 491 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 PNPLA4P41247 253 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 PDE6CP51160 858 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 ZXDBP98169 803 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 MYL7Q01449 175 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 COL28A1Q2UY09 1125 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 SLFN12LQ6IEE8 588 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 SPATA2LQ8IUW3 424 aaPredicted RBP13.67□□□□□ -0.22
SS18-219ENST00000581570 SFTPA1Q8IWL2 248 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 ADGRG2Q8IZP9 1017 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 MINDY1Q8N5J2 469 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 DEFB119Q8N690 84 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 SPATA18Q8TC71 538 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 COL26A1Q96A83 441 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 PARVGQ9HBI0 331 aa13.67□□□□□ -0.22
SS18-219ENST00000581570 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms