RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 ZFYVE19Q96K21 471 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 TNIP3Q96KP6 325 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 MYRFLQ96LU7 910 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 CEP295NLQ96MC4 621 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 ELOVL4Q9GZR5 314 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 GZF1Q9H116 711 aaPredicted RBP16.54■□□□□ 0.24
SF3B3-215ENST00000577085 XYLT2Q9H1B5 865 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 C8orf33Q9H7E9 229 aaPredicted RBP16.54■□□□□ 0.24
SF3B3-215ENST00000577085 KIF9Q9HAQ2 790 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 TDP1Q9NUW8 608 aa16.54■□□□□ 0.24
SF3B3-215ENST00000577085 NCANO14594 1321 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 TRAV19A0A0A6YYK7 116 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 PROB1E7EW31 1015 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 C4BPAP04003 597 aaKnown RBP16.53■□□□□ 0.24
SF3B3-215ENST00000577085 CKMP06732 381 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 PSMC2P35998 433 aaKnown RBP16.53■□□□□ 0.24
SF3B3-215ENST00000577085 RPS9P46781 194 aaKnown RBP16.53■□□□□ 0.24
SF3B3-215ENST00000577085 PDE6CP51160 858 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 MLLT6P55198 1093 aaPredicted RBP16.53■□□□□ 0.24
SF3B3-215ENST00000577085 ADAM9Q13443 819 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 PNOCQ13519 176 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 PPP2R5DQ14738 602 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 TMEM150AQ86TG1 271 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 FAM186BQ8IYM0 893 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 TTC8Q8TAM2 541 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 TAF4BQ92750 862 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 SPATA17Q96L03 361 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 MED10Q9BTT4 135 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 DPEP3Q9H4B8 488 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 SMYD3Q9H7B4 428 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 VRTNQ9H8Y1 702 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 COL4A3Q01955 1670 aa16.53■□□□□ 0.24
SF3B3-215ENST00000577085 ARNTLO00327 626 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 MAPK13O15264 365 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 USP17L7P0C7H9 530 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 RAP1GAPP47736 663 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 CDH8P55286 799 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 FAM160A1Q05DH4 1040 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 LRRC32Q14392 662 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 NFIL3Q16649 462 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 ZACNQ401N2 412 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 RALGPS2Q86X27 583 aaPredicted RBP16.52■□□□□ 0.24
SF3B3-215ENST00000577085 FMR1NBQ8N0W7 255 aaPredicted RBP16.52■□□□□ 0.24
SF3B3-215ENST00000577085 USP13Q92995 863 aaPredicted RBP16.52■□□□□ 0.24
SF3B3-215ENST00000577085 SMARCE1Q969G3 411 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 CLDN23Q96B33 292 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 TSG101Q99816 390 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 DNAI2Q9GZS0 605 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 MMRN2Q9H8L6 949 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 LMAN1LQ9HAT1 526 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 GTSE1Q9NYZ3 720 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 TRPM5Q9NZQ8 1165 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 FBXO4Q9UKT5 387 aa16.52■□□□□ 0.24
SF3B3-215ENST00000577085 MIA3Q5JRA6 1907 aa16.52■□□□□ 0.23
SF3B3-215ENST00000577085 NUP210Q8TEM1 1887 aaPredicted RBP16.51■□□□□ 0.23
SF3B3-215ENST00000577085 F8VP50 259 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 SPECC1L-ADORA2AF8WAN1 911 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 AKAP3O75969 853 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 VNN1O95497 513 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 ABL1P00519 1130 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 SP9P0CG40 484 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 EPB41P11171 864 aaKnown RBP16.51■□□□□ 0.23
SF3B3-215ENST00000577085 AMPD2Q01433 879 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 CSTF1Q05048 431 aaKnown RBP16.51■□□□□ 0.23
SF3B3-215ENST00000577085 IFRD2Q12894 506 aaPredicted RBP16.51■□□□□ 0.23
SF3B3-215ENST00000577085 ITPRIPL2Q3MIP1 535 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 SV2AQ7L0J3 742 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 SMYD4Q8IYR2 804 aaPredicted RBP16.51■□□□□ 0.23
SF3B3-215ENST00000577085 C8orf48Q96LL4 319 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 LRRC3BQ96PB8 259 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 GSDMAQ96QA5 445 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 GTPBP4Q9BZE4 634 aaKnown RBP16.51■□□□□ 0.23
SF3B3-215ENST00000577085 SEMA4AQ9H3S1 761 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 GKN1Q9NS71 199 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 CCL26Q9Y258 94 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 TICRRQ7Z2Z1 1910 aa16.51■□□□□ 0.23
SF3B3-215ENST00000577085 CETN3O15182 167 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 STX10O60499 249 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 HLA-DRAP01903 254 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 TRIM49P0CI25 452 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 TRIM49CP0CI26 452 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 SOX9P48436 509 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 PPP3CCP48454 512 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 GCLMP48507 274 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 TNK2Q07912 1038 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 ZNF268Q14587 947 aaPredicted RBP16.5■□□□□ 0.23
SF3B3-215ENST00000577085 EDRF1Q3B7T1 1238 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 ZNF658Q5TYW1 1059 aaPredicted RBP16.5■□□□□ 0.23
SF3B3-215ENST00000577085 ELMO3Q96BJ8 720 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 SLITRK1Q96PX8 696 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 IER2Q9BTL4 223 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 ZNF518BQ9C0D4 1074 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.5■□□□□ 0.23
SF3B3-215ENST00000577085 R4GN57 208 aa16.5■□□□□ 0.23
SF3B3-215ENST00000577085 PRR23AA6NEV1 266 aa16.49■□□□□ 0.23
SF3B3-215ENST00000577085 CLDN5O00501 218 aa16.49■□□□□ 0.23
SF3B3-215ENST00000577085 KINO60870 393 aaKnown RBP16.49■□□□□ 0.23
SF3B3-215ENST00000577085 TADA3O75528 432 aa16.49■□□□□ 0.23
SF3B3-215ENST00000577085 HDCP19113 662 aa16.49■□□□□ 0.23
SF3B3-215ENST00000577085 CTHP32929 405 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms