RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF806P0C7X5 589 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 LIMK1P53667 647 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 MYO1EQ12965 1108 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 LMBRD2Q68DH5 695 aaPredicted RBP22.57■■□□□ 1.2
VPS53-216ENST00000574029 C4orf50Q6ZRC1 276 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 SCN4BQ8IWT1 228 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 CCDC65Q8IXS2 484 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 FSIP1Q8NA03 581 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 OR5B17Q8NGF7 314 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 KBTBD7Q8WVZ9 684 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 EZH1Q92800 747 aaPredicted RBP22.57■■□□□ 1.2
VPS53-216ENST00000574029 HPDLQ96IR7 371 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 ZC3H10Q96K80 434 aaKnown RBP22.57■■□□□ 1.2
VPS53-216ENST00000574029 PTPRDP23468 1912 aa22.57■■□□□ 1.2
VPS53-216ENST00000574029 SPAG17Q6Q759 2223 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 C2orf78A6NCI8 922 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 CCDC192P0DO97 292 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 TCF3P15923 654 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 LMO2P25791 158 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 IFNAR2P48551 515 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 SURF1Q15526 300 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 EML3Q32P44 896 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 ARL14EPQ8N8R7 260 aaPredicted RBP22.56■■□□□ 1.2
VPS53-216ENST00000574029 GLIS3Q8NEA6 775 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 DDX1Q92499 740 aaKnown RBP22.56■■□□□ 1.2
VPS53-216ENST00000574029 CD101Q93033 1021 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 ATP2A3Q93084 1043 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 SPATA17Q96L03 361 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 CEP295NLQ96MC4 621 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 SYT15Q9BQS2 421 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 POLR3BQ9NW08 1133 aaPredicted RBP22.56■■□□□ 1.2
VPS53-216ENST00000574029 MAGEC2Q9UBF1 373 aaPredicted RBP22.56■■□□□ 1.2
VPS53-216ENST00000574029 CDH9Q9ULB4 789 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 WNT6Q9Y6F9 365 aa22.56■■□□□ 1.2
VPS53-216ENST00000574029 ZNF233A6NK53 670 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 TNNC2P02585 160 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 SF3A2Q15428 464 aaKnown RBP22.55■■□□□ 1.2
VPS53-216ENST00000574029 DUOXA2Q1HG44 320 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 AASDHQ4L235 1098 aaPredicted RBP22.55■■□□□ 1.2
VPS53-216ENST00000574029 PLA2G2CQ5R387 149 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 VSTM1Q6UX27 236 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 STXBP4Q6ZWJ1 553 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 SYT13Q7L8C5 426 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 CBWD2Q8IUF1 395 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 RPLP0P6Q8NHW5 317 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 SH3RF2Q8TEC5 729 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 TNMDQ9H2S6 317 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 CRTAC1Q9NQ79 661 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 ARHGAP26Q9UNA1 814 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 MTMR6Q9Y217 621 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 R3HCC1Q9Y3T6 440 aaKnown RBP22.55■■□□□ 1.2
VPS53-216ENST00000574029 PCDHGA5Q9Y5G8 931 aa22.55■■□□□ 1.2
VPS53-216ENST00000574029 HDCP19113 662 aa22.54■■□□□ 1.2
VPS53-216ENST00000574029 HOXD13P35453 343 aa22.54■■□□□ 1.2
VPS53-216ENST00000574029 NASPP49321 788 aaPredicted RBP22.54■■□□□ 1.2
VPS53-216ENST00000574029 PSMC1P62191 440 aaKnown RBP22.54■■□□□ 1.2
VPS53-216ENST00000574029 MAPRE1Q15691 268 aaKnown RBP22.54■■□□□ 1.2
VPS53-216ENST00000574029 CCDC6Q16204 474 aa22.54■■□□□ 1.2
VPS53-216ENST00000574029 PDILTQ8N807 584 aa22.54■■□□□ 1.2
VPS53-216ENST00000574029 C12orf50Q8NA57 414 aaPredicted RBP22.54■■□□□ 1.2
VPS53-216ENST00000574029 HPS3Q969F9 1004 aa22.54■■□□□ 1.2
VPS53-216ENST00000574029 MYLPFQ96A32 169 aa22.54■■□□□ 1.2
VPS53-216ENST00000574029 HHIPQ96QV1 700 aa22.54■■□□□ 1.2
VPS53-216ENST00000574029 TM4SF5O14894 197 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 PFKLP17858 780 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 WARSP23381 471 aaKnown RBP22.53■■□□□ 1.2
VPS53-216ENST00000574029 PDE6CP51160 858 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 KCNB1Q14721 858 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 E2F4Q16254 413 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 WDR49Q8IV35 697 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 TTC16Q8NEE8 873 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 INTS4Q96HW7 963 aaKnown RBP22.53■■□□□ 1.2
VPS53-216ENST00000574029 LRRC27Q9C0I9 530 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 LINC00597Q9H2U6 94 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 ZSCAN16Q9H4T2 348 aaPredicted RBP22.53■■□□□ 1.2
VPS53-216ENST00000574029 KIAA1586Q9HCI6 787 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 RXFP3Q9NSD7 469 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 KBTBD4Q9NVX7 518 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 HSPBP1Q9NZL4 362 aa22.53■■□□□ 1.2
VPS53-216ENST00000574029 BDNFP23560 247 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 GRIK1P39086 918 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 ZXDBP98169 803 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 NR1H3Q13133 447 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 PLK5Q496M5 336 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 IL31Q6EBC2 164 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 ACDQ96AP0 544 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 TRIM9Q9C026 710 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 EBF1Q9UH73 591 aa22.52■■□□□ 1.2
VPS53-216ENST00000574029 EIF3DO15371 548 aaKnown RBP eCLIP22.51■■□□□ 1.19
VPS53-216ENST00000574029 APBB3O95704 486 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 PDGFRBP09619 1106 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 USP46P62068 366 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 DMC1Q14565 340 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 DENND5BQ6ZUT9 1274 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 EPM2AIP1Q7L775 607 aaPredicted RBP22.51■■□□□ 1.19
VPS53-216ENST00000574029 TRAPPC11Q7Z392 1133 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 LINC00301Q8NCQ3 95 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 MYCBPAPQ8TBZ2 947 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 ZNF507Q8TCN5 953 aa22.51■■□□□ 1.19
VPS53-216ENST00000574029 PCED1BQ96HM7 432 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms