RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 LRCH1Q9Y2L9 728 aa11.27□□□□□ -0.61
CCDC40-207ENST00000572253 SMIM24O75264 130 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 CIB2O75838 187 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 KRT3P12035 628 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 EIF4BP23588 611 aaKnown RBP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 WNT7BP56706 349 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 EIF3EP60228 445 aaKnown RBP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 TMEM154Q6P9G4 183 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 KRT27Q7Z3Y8 459 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 KCTD6Q8NC69 237 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 DHRS4Q9BTZ2 278 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 MMADHCQ9H3L0 296 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 FBXO40Q9UH90 709 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 A0A0B4J269 797 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 COPEO14579 308 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 GSC2O15499 205 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 DNAJC6O75061 913 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 STBD1O95210 358 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 KCNA2P16389 499 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SERPINB3P29508 390 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 OGDHQ02218 1023 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 KRT72Q14CN4 511 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SURF1Q15526 300 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 CYP4A22Q5TCH4 519 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SNX30Q5VWJ9 437 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 TXNRD3NBQ6F5E7 133 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 LRRC6Q86X45 466 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 DCAKDQ8WVC6 231 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 FAM111AQ96PZ2 611 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 COL11A2P13942 1736 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 ZNF541Q9H0D2 1346 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 E7ESA3 106 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 MAP3K7O43318 606 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 MED7O43513 233 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 ASS1P00966 412 aaKnown RBP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SUPT20HL2P0C7V6 817 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SLC34A1Q06495 639 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SGSM1Q2NKQ1 1148 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SUPT20HL1Q3ZLR7 823 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 KHDC1Q4VXA5 237 aaKnown RBP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 WDR49Q8IV35 697 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SH3GL3Q99963 347 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 PORCNQ9H237 461 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 RPAP3Q9H6T3 665 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-207ENST00000572253 CISHQ9NSE2 258 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 NMRK1Q9NWW6 199 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 ENO4A6NNW6 628 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 RNF8O76064 485 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 LINGO3P0C6S8 592 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 FGFR1P11362 822 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 SMTNL2Q2TAL5 461 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 BRSK2Q8IWQ3 736 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 CTAGE3PQ8IX95 158 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 CCDC110Q8TBZ0 833 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 ZNF333Q96JL9 665 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 ANGPTL2Q9UKU9 493 aa11.26□□□□□ -0.61
CCDC40-207ENST00000572253 DPPA5A6NC42 116 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 CAPN9O14815 690 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 KRT37O76014 449 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 PGM1P36871 562 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 PSMC1P62191 440 aaKnown RBP11.25□□□□□ -0.61
CCDC40-207ENST00000572253 CTC1Q2NKJ3 1217 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 MSS51Q4VC12 460 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 PLEKHG4Q58EX7 1191 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 ATG16L1Q676U5 607 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 RFWD3Q6PCD5 774 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 FAM71DQ8N9W8 422 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 MIPEPQ99797 713 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 ZNF302Q9NR11 478 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 WDR35Q9P2L0 1181 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 SAE1Q9UBE0 346 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-207ENST00000572253 A8MXQ7 604 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 PSMG1O95456 288 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 NPTXRO95502 500 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 RBP3P10745 1247 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 BGNP21810 368 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 KDELR1P24390 212 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 SARNPP82979 210 aaKnown RBP11.25□□□□□ -0.61
CCDC40-207ENST00000572253 ROR1Q01973 937 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 RCN2Q14257 317 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 KPNB1Q14974 876 aaKnown RBP11.25□□□□□ -0.61
CCDC40-207ENST00000572253 DUOXA2Q1HG44 320 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 ZBTB41Q5SVQ8 909 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 DARS2Q6PI48 645 aaKnown RBP11.25□□□□□ -0.61
CCDC40-207ENST00000572253 ABHD15Q6UXT9 468 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 SMC1BQ8NDV3 1235 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 PTCD3Q96EY7 689 aaKnown RBP11.25□□□□□ -0.61
CCDC40-207ENST00000572253 OXNAD1Q96HP4 312 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-207ENST00000572253 C10orf88Q9H8K7 445 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 FCHO1O14526 889 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 OATP04181 439 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 GDF10P55107 478 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 TGFB2P61812 414 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 OCRLQ01968 901 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 GAD2Q05329 585 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 DSTYKQ6XUX3 929 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 CALN1Q9BXU9 219 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 PCDHGC3Q9UN70 934 aa11.25□□□□□ -0.61
CCDC40-207ENST00000572253 ZBTB12Q9Y330 459 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms