RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MESDQ14696 234 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ZNF394Q53GI3 561 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 SEL1L2Q5TEA6 688 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 WDR93Q6P2C0 686 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 FBXO46Q6PJ61 603 aaPredicted RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 SCARA5Q6ZMJ2 495 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 CTU1Q7Z7A3 348 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 PALB2Q86YC2 1186 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 RHOT1Q8IXI2 618 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 FAM126BQ8IXS8 530 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ABI1Q8IZP0 508 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 NIPA2Q8N8Q9 360 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ANKRD52Q8NB46 1076 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 SPATA4Q8NEY3 305 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 WHAMMQ8TF30 809 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 HNRNPLLQ8WVV9 542 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 C18orf25Q96B23 403 aaPredicted RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 ARHGEF26Q96DR7 871 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 DEFB118Q96PH6 123 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 FAM193BQ96PV7 902 aaPredicted RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 GAD1Q99259 594 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ZSWIM1Q9BR11 485 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 TRIM62Q9BVG3 475 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 REPIN1Q9BWE0 567 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 MRPL9Q9BYD2 267 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 ELOVL4Q9GZR5 314 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 UNC93B1Q9H1C4 597 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 TRPV6Q9H1D0 765 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 SMYD3Q9H7B4 428 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 OSGEPQ9NPF4 335 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ATP13A2Q9NQ11 1180 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 TMEM161AQ9NX61 479 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 DDX56Q9NY93 547 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 KLK14Q9P0G3 267 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 TUBGCP4Q9UGJ1 667 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ANAPC7Q9UJX3 599 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 CDH9Q9ULB4 789 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 SCN10AQ9Y5Y9 1956 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 CCDC151A5D8V7 595 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 TMEM191CA6NGB0 347 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 C9IYK1 514 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 TMEM189-UBE2V1I3L0A0 370 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 M0QYV0 167 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 PODXLO00592 558 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 PTGESO14684 152 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 GABRDO14764 452 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 NDC80O14777 642 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 CEP104O60308 925 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 RNF8O76064 485 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 MICAL2O94851 1124 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 TFRCP02786 760 aaKnown RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 CYP11A1P05108 521 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 KRT7P08729 469 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 TYMPP19971 482 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 COMTP21964 271 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 BRD2P25440 801 aaKnown RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 GBP1P32455 592 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 MLH1P40692 756 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 GPD2P43304 727 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 AARSP49588 968 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS39-213ENST00000570062 BCAT1P54687 386 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 CDH8P55286 799 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 USP46P62068 366 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 PSMC1P62191 440 aaKnown RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 BST2Q10589 180 aaKnown RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 ELAVL2Q12926 359 aaKnown RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 UPP1Q16831 310 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 SOWAHAQ2M3V2 549 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 ERCC6LQ2NKX8 1250 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 PLEKHG4Q58EX7 1191 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 GLRA4Q5JXX5 417 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 TEX35Q5T0J7 233 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 AGMOQ6ZNB7 445 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 MMS22LQ6ZRQ5 1243 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 POLNQ7Z5Q5 900 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 TMEM110Q86TL2 294 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 ADGRF2Q8IZF7 708 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 SH3TC2Q8TF17 1288 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 ANKRD7Q92527 254 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 RBM41Q96IZ5 413 aaKnown RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 CAPZA3Q96KX2 299 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 HNRNPABQ99729 332 aaKnown RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 ACBD6Q9BR61 282 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 C11orf70Q9BRQ4 267 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 FRMD8P1Q9BZ68 369 aaPredicted RBP8.41□□□□□ -1.06
VPS39-213ENST00000570062 SLITRK6Q9H5Y7 841 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 ACP6Q9NPH0 428 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS39-213ENST00000570062 ASNSD1Q9NWL6 643 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 COG5Q9UP83 839 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 EFR3BQ9Y2G0 817 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 PCDHB7Q9Y5E2 793 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 KAT6AQ92794 2004 aa8.41□□□□□ -1.06
VPS39-213ENST00000570062 DDX3YO15523 660 aaKnown RBP8.4□□□□□ -1.06
VPS39-213ENST00000570062 ZNF189O75820 626 aaPredicted RBP8.4□□□□□ -1.06
VPS39-213ENST00000570062 ZRANB2O95218 330 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS39-213ENST00000570062 GLI1P08151 1106 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 PFKMP08237 780 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 RAP1GAPP47736 663 aa8.4□□□□□ -1.06
VPS39-213ENST00000570062 PEX5P50542 639 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 194.9 ms