RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 UBL4AP11441 157 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 CPEP16870 476 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 BPIP17213 487 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 SLC16A2P36021 539 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 KIR2DL3P43628 341 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 MANFP55145 182 aaKnown RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 TPD52P55327 224 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 NPEPPSP55786 919 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 NRG3P56975 720 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 NLRP5P59047 1200 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 CD69Q07108 199 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 STIM1Q13586 685 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ITGA7Q13683 1181 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TUBA3CQ13748 450 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 DHX8Q14562 1220 aaKnown RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 R3HDM1Q15032 1099 aaKnown RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 PTPN14Q15678 1187 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ELAVL1Q15717 326 aaKnown RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 TPD52L1Q16890 204 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 EGFLAMQ63HQ2 1017 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 NXNQ6DKJ4 435 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 NEPROQ6NW34 567 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 PDXDC1Q6P996 788 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 FAM111BQ6SJ93 734 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 MCM10Q7L590 875 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 MAATS1Q7Z4T9 603 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 ADGRE4PQ86SQ3 457 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 SESTD1Q86VW0 696 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 RASSF3Q86WH2 238 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TRIML2Q8N7C3 387 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 CCDC89Q8N998 374 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 CNNM3Q8NE01 707 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 OR5M3Q8NGP4 307 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 EDAQ92838 391 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 EXTL1Q92935 676 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ATP6V0A1Q93050 837 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 RUNDC1Q96C34 613 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 SDCCAG3Q96C92 435 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TBC1D31Q96DN5 1066 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ANKRD27Q96NW4 1050 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TRAPPC9Q96Q05 1148 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 SPAG5Q96R06 1193 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 CCT7Q99832 543 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 UQCC2Q9BRT2 126 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 RTFDC1Q9BY42 306 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 KRTAP9-8Q9BYQ0 159 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 HAPLN2Q9GZV7 340 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 OSBPL5Q9H0X9 879 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 VPS33BQ9H267 617 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 VPS11Q9H270 941 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 EBF2Q9HAK2 575 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 PARVGQ9HBI0 331 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 MSL2Q9HCI7 577 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 IL23AQ9NPF7 189 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 GPR108Q9NPR9 543 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 KMT5AQ9NQR1 393 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TOPORSQ9NS56 1045 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 KLC4Q9NSK0 619 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TYW1Q9NV66 732 aaKnown RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.51□□□□□ -1.85
VPS35-208ENST00000568612 VPS18Q9P253 973 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 WDR35Q9P2L0 1181 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 SUCLA2Q9P2R7 463 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 ASAP1Q9ULH1 1129 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 EDARQ9UNE0 448 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 CNPY2Q9Y2B0 182 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ASB3Q9Y575 518 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 CAPN7Q9Y6W3 813 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 KAT6BQ8WYB5 2073 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 KIF24Q5T7B8 1368 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 UBN2Q6ZU65 1347 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 ZNF644Q9H582 1327 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 CFAP43Q8NDM7 1665 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 FANCD2Q9BXW9 1451 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 A0A0A6YYK5 440 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 GOLGA6L7A0A1B0GV03 622 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 A0A1B0GVG6 124 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 PMS2P1A4D2B8 440 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 C2orf81A6NN90 581 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 EFCAB8A8MWE9 144 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 ANKRD65E5RJM6 399 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 C1QTNF3-AMACRE9PGA6 284 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 MYO1FO00160 1098 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SNX2O60749 519 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 PRAMEF4O60810 478 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 KCNJ13O60928 360 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 BAIAP3O94812 1187 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SEC31AO94979 1220 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 GAAP10253 952 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 PCP11498 1178 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 POLR2EP19388 210 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 TNFRSF1AP19438 455 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 CD9P21926 228 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 S100A1P23297 94 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 KIF5BP33176 963 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 HALP42357 657 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 ACADSBP45954 432 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 CTCFP49711 727 aaPredicted RBP3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms