RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 MAPRE1Q15691 268 aaKnown RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CNGA2Q16280 664 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 NFE2Q16621 373 aaPredicted RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CFAP221Q4G0U5 840 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PPP1R26Q5T8A7 1209 aaPredicted RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 LCLAT1Q6UWP7 414 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 RNF19BQ6ZMZ0 732 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PAQR9Q6ZVX9 377 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 CCDC186Q7Z3E2 898 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF677Q86XU0 584 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 GLYCTKQ8IVS8 523 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 ZNF461Q8TAF7 563 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 OLIG1Q8TAK6 271 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 SLC2A14Q8TDB8 520 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 SLC20A1Q8WUM9 679 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 MYLPFQ96A32 169 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 MRPL38Q96DV4 380 aaKnown RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PGLYRP2Q96PD5 576 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 KLHL5Q96PQ7 755 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PANX2Q96RD6 677 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PPP1R9BQ96SB3 815 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 HNRNPABQ99729 332 aaKnown RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 EMILIN2Q9BXX0 1053 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 HAUS4Q9H6D7 363 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 ZNHIT6Q9NWK9 470 aaKnown RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 ARHGAP20Q9P2F6 1191 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 PCDHGC3Q9UN70 934 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 LHX6Q9UPM6 363 aa8.97□□□□□ -0.97
SF3B3-212ENST00000568539 BZW2Q9Y6E2 419 aaKnown RBP8.97□□□□□ -0.97
SF3B3-212ENST00000568539 TSC2P49815 1807 aa8.96□□□□□ -0.97
SF3B3-212ENST00000568539 KIAA1671Q9BY89 1806 aa8.96□□□□□ -0.97
SF3B3-212ENST00000568539 MTMR11A4FU01 709 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CLDN5O00501 218 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 MICAL2O94851 1124 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 C1RP00736 705 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ADH1AP07327 375 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 MMEP08473 750 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 PLEKP08567 350 aaPredicted RBP8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CFHP08603 1231 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ATF2P15336 505 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CHRNB2P17787 502 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ADORA2BP29275 332 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CDR1P51861 262 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 FMO1Q01740 532 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CCDC173Q0VFZ6 552 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 GRIN2CQ14957 1233 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 STILQ15468 1287 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 PTPROQ16827 1216 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 GOLGA7BQ2TAP0 167 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 PKDCCQ504Y2 493 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 TDRD12Q587J7 1177 aaKnown RBP8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ZNF697Q5TEC3 545 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 TAF3Q5VWG9 929 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 TPGS2Q68CL5 300 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 LILRA6Q6PI73 481 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 C4orf50Q6ZRC1 276 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ZNF571Q7Z3V5 609 aaPredicted RBP8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ADGRD2Q7Z7M1 963 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 FAM35AQ86V20 835 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 TTC30AQ86WT1 665 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 SPATA2LQ8IUW3 424 aaPredicted RBP8.96□□□□□ -0.98
SF3B3-212ENST00000568539 TMEM139Q8IV31 216 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ANKRD52Q8NB46 1076 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ATAD1Q8NBU5 361 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 SPPL2BQ8TCT7 592 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 C2orf15Q8WU43 125 aaKnown RBP8.96□□□□□ -0.98
SF3B3-212ENST00000568539 FUBP3Q96I24 572 aaKnown RBP eCLIP8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CHP1Q99653 195 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 AGPAT1Q99943 283 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 RHOBTB2Q9BYZ6 727 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ZNF518BQ9C0D4 1074 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CRISPLD1Q9H336 500 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 PRDM12Q9H4Q4 367 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 CSNK1G1Q9HCP0 422 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 ABCB6Q9NP58 842 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 AFF4Q9UHB7 1163 aaKnown RBP8.96□□□□□ -0.98
SF3B3-212ENST00000568539 TSPAN16Q9UKR8 245 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 MAFFQ9ULX9 164 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 PCDHB5Q9Y5E4 795 aa8.96□□□□□ -0.98
SF3B3-212ENST00000568539 SSU72P8A0A1W2PR75 194 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 M0QYV0 167 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 DDX3XO00571 662 aaKnown RBP eCLIP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 TGM5O43548 720 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 CLASP2O75122 1294 aaKnown RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 SEC24AO95486 1093 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 FAM200BP0CF97 657 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 HAPLN1P10915 354 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 BDNFP23560 247 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 CYP2F1P24903 491 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 KLRC2P26717 231 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 SSTR3P32745 418 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 EIF4A3P38919 411 aaKnown RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 MAGEA11P43364 429 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 CLCN4P51793 760 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 CACNA2D1P54289 1103 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 BCAT1P54687 386 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 ADCY1Q08828 1119 aa8.95□□□□□ -0.98
SF3B3-212ENST00000568539 ASTE1Q2TB18 679 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-212ENST00000568539 DENND1BQ6P3S1 775 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms