RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ING5Q8WYH8 240 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 PSMG2Q969U7 264 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 ZNF512Q96ME7 567 aaPredicted RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 HEXIM2Q96MH2 286 aaKnown RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 KCNK16Q96T55 309 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 ZSWIM1Q9BR11 485 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 LSM14BQ9BX40 385 aaKnown RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 FAM50BQ9Y247 325 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 MYO10Q9HD67 2058 aa20.77■□□□□ 0.92
CLN3-225ENST00000566824 LGALS16A8MUM7 142 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 BECN2A8MW95 431 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 C2CD4DB7Z1M9 353 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 LOC730098B7Z3J9 87 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 F8VP50 259 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 MYL4P12829 197 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 FSHRP23945 695 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 PLD1Q13393 1074 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 ARHGAP44Q17R89 818 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 TMEM270Q6UE05 265 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 GET4Q7L5D6 327 aaPredicted RBP20.77■□□□□ 0.91
CLN3-225ENST00000566824 ZMIZ2Q8NF64 920 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 TFAP2BQ92481 460 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 CYFIP2Q96F07 1278 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 SMOQ99835 787 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 APEX2Q9UBZ4 518 aa20.77■□□□□ 0.91
CLN3-225ENST00000566824 C19orf67A6NJJ6 358 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 SLC38A8A6NNN8 435 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 EPHB6O15197 1021 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 TEX33O43247 280 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 PNMA6AP0CW24 399 aaPredicted RBP20.76■□□□□ 0.91
CLN3-225ENST00000566824 CEBPBP17676 345 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 GRIK1P39086 918 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 ZNF132P52740 706 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 EPHA5P54756 1037 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 USP46P62068 366 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 RPL10AP62906 217 aaKnown RBP20.76■□□□□ 0.91
CLN3-225ENST00000566824 IQCEQ6IPM2 695 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 VSTM1Q6UX27 236 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 RBBP8NLQ8NC74 664 aaPredicted RBP20.76■□□□□ 0.91
CLN3-225ENST00000566824 NAP1L5Q96NT1 182 aaPredicted RBP20.76■□□□□ 0.91
CLN3-225ENST00000566824 HNRNPABQ99729 332 aaKnown RBP20.76■□□□□ 0.91
CLN3-225ENST00000566824 TSPY26PQ9H489 355 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 IL21Q9HBE4 155 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 ACP6Q9NPH0 428 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 KRT82Q9NSB4 513 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 DNAJC12Q9UKB3 198 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 SIK3Q9Y2K2 1263 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 FHOD1Q9Y613 1164 aa20.76■□□□□ 0.91
CLN3-225ENST00000566824 ANAPC1Q9H1A4 1944 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 AP1G2O75843 785 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 NOL4O94818 638 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 YWHAEP62258 255 aaKnown RBP20.75■□□□□ 0.91
CLN3-225ENST00000566824 KLHDC7AQ5VTJ3 777 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 GAREM2Q75VX8 874 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 TMEM150AQ86TG1 271 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 ELMOD1Q8N336 334 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 TTC39CQ8N584 583 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 SHKBP1Q8TBC3 707 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 C8orf48Q96LL4 319 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 GANQ9H2C0 597 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 FAM124BQ9H5Z6 455 aaPredicted RBP20.75■□□□□ 0.91
CLN3-225ENST00000566824 PRKAG3Q9UGI9 489 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 MAGED2Q9UNF1 606 aaPredicted RBP20.75■□□□□ 0.91
CLN3-225ENST00000566824 CNTN6Q9UQ52 1028 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 ASB3Q9Y575 518 aa20.75■□□□□ 0.91
CLN3-225ENST00000566824 SSTR3P32745 418 aaPredicted RBP20.74■□□□□ 0.91
CLN3-225ENST00000566824 MFAP3P55082 362 aa20.74■□□□□ 0.91
CLN3-225ENST00000566824 ZNF445P59923 1031 aa20.74■□□□□ 0.91
CLN3-225ENST00000566824 SYCP1Q15431 976 aa20.74■□□□□ 0.91
CLN3-225ENST00000566824 STXBP5Q5T5C0 1151 aa20.74■□□□□ 0.91
CLN3-225ENST00000566824 UHRF1Q96T88 793 aaPredicted RBP20.74■□□□□ 0.91
CLN3-225ENST00000566824 NAA15Q9BXJ9 866 aaKnown RBP20.74■□□□□ 0.91
CLN3-225ENST00000566824 GPR88Q9GZN0 384 aa20.74■□□□□ 0.91
CLN3-225ENST00000566824 AVENQ9NQS1 362 aaPredicted RBP20.74■□□□□ 0.91
CLN3-225ENST00000566824 ASAH2Q9NR71 780 aa20.74■□□□□ 0.91
CLN3-225ENST00000566824 MRPS23Q9Y3D9 190 aaKnown RBP20.74■□□□□ 0.91
CLN3-225ENST00000566824 A0A1W2PRU2 124 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 CD19P15391 556 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 BRD2P25440 801 aaKnown RBP20.73■□□□□ 0.91
CLN3-225ENST00000566824 GBP2P32456 591 aaPredicted RBP20.73■□□□□ 0.91
CLN3-225ENST00000566824 MAP3K7CLP57077 242 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 UBXN1Q04323 297 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 VEPH1Q14D04 833 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 FKBP15Q5T1M5 1219 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 ARHGAP17Q68EM7 881 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 CLEC20AQ6ZU45 233 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 PDZD4Q76G19 769 aaPredicted RBP20.73■□□□□ 0.91
CLN3-225ENST00000566824 GPRIN1Q7Z2K8 1008 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 ITIH5Q86UX2 942 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 NPAS3Q8IXF0 933 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 ANKRD20A12PQ8NF67 263 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 SHC3Q92529 594 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 FGF13Q92913 245 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 JAKMIP2Q96AA8 810 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 SMARCD1Q96GM5 515 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 SPATA17Q96L03 361 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 ZSWIM3Q96MP5 696 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 CSNK1G1Q9HCP0 422 aa20.73■□□□□ 0.91
CLN3-225ENST00000566824 RTN4Q9NQC3 1192 aaKnown RBP20.73■□□□□ 0.91
CLN3-225ENST00000566824 HHLA1C9JL84 531 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms