RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 GNL1P36915 607 aaPredicted RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 GPR15P49685 360 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 CDR1P51861 262 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 TNNC1P63316 161 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 TRPC3Q13507 836 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 SIM2Q14190 667 aaPredicted RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 KCNB1Q14721 858 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 KNOP1Q1ED39 458 aaKnown RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 TMEM196Q5HYL7 178 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 GLIS3Q8NEA6 775 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 MYCBPAPQ8TBZ2 947 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 SCFD1Q8WVM8 642 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 KBTBD7Q8WVZ9 684 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 ATP2A3Q93084 1043 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 HPS3Q969F9 1004 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 EBF3Q9H4W6 596 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 RBM12Q9NTZ6 932 aaKnown RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 CCL26Q9Y258 94 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 K7ESF4 209 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 MYL1P05976 194 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 TCF3P15923 654 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 GRIK1P39086 918 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 CYP2J2P51589 502 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 CYP24A1Q07973 514 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 PSMD2Q13200 908 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 MTF1Q14872 753 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 SDHAF4Q5VUM1 108 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 RESP18Q5W5W9 173 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 PRR23BQ6ZRT6 265 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 DENND5BQ6ZUT9 1274 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 RDH13Q8NBN7 331 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 OSCP1Q8WVF1 389 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 SYAP1Q96A49 352 aaPredicted RBP15.93■□□□□ 0.14
CLN3-222ENST00000566083 CCDC127Q96BQ5 260 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 TRPC7Q9HCX4 862 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 HPS4Q9NQG7 708 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 TRPM5Q9NZQ8 1165 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 USP25Q9UHP3 1055 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 USP18Q9UMW8 372 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 PCDHA7Q9UN72 937 aa15.93■□□□□ 0.14
CLN3-222ENST00000566083 PTPRJQ12913 1337 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 EXOC3O60645 756 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 SLFN14P0C7P3 912 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 HDCP19113 662 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 LMO2P25791 158 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 IFNAR2P48551 515 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 CYP27A1Q02318 531 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 RSPO4Q2I0M5 234 aaPredicted RBP15.92■□□□□ 0.14
CLN3-222ENST00000566083 WDR72Q3MJ13 1102 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 Q6ZS52 159 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 WDR5BQ86VZ2 330 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 OR6B3Q8NGW1 331 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 MYLPFQ96A32 169 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 C8orf48Q96LL4 319 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 CRTAC1Q9NQ79 661 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 DUS2Q9NX74 493 aaKnown RBP15.92■□□□□ 0.14
CLN3-222ENST00000566083 ARHGAP26Q9UNA1 814 aa15.92■□□□□ 0.14
CLN3-222ENST00000566083 SPTBN2O15020 2390 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 CHURC1-FNTBB4DL54 471 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 CLIC2O15247 247 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 PHACTR2O75167 634 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 TADA3O75528 432 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 PDGFRBP09619 1106 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 BDNFP23560 247 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 FNTBP49356 437 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 NOP14P78316 857 aaKnown RBP15.91■□□□□ 0.14
CLN3-222ENST00000566083 ZNF77Q15935 545 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 NELFCDQ8IXH7 590 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 CAMKK1Q8N5S9 505 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 TMEM174Q8WUU8 243 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 PCED1BQ96HM7 432 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 P2RY13Q9BPV8 354 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 TTLL2Q9BWV7 592 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 ELOVL4Q9GZR5 314 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 ECT2Q9H8V3 914 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 SLC39A2Q9NP94 309 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 GCNT4Q9P109 453 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 RCOR1Q9UKL0 485 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 CDV3Q9UKY7 258 aaKnown RBP15.91■□□□□ 0.14
CLN3-222ENST00000566083 SLC8A2Q9UPR5 921 aa15.91■□□□□ 0.14
CLN3-222ENST00000566083 ATP2C2O75185 946 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 KIF20AO95235 890 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 CST3P01034 146 aaPredicted RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 TRIM21P19474 475 aaKnown RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 AFMP43652 599 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 PSMC1P62191 440 aaKnown RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 USP4Q13107 963 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 FOXD4L5Q5VV16 416 aaPredicted RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 TDRD10Q5VZ19 366 aaKnown RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 TRIM68Q6AZZ1 485 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 CEP68Q76N32 757 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 FOXD4L4Q8WXT5 416 aaPredicted RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 LOXL4Q96JB6 756 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 FAM84AQ96KN4 292 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 SLITRK1Q96PX8 696 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 CYP2S1Q96SQ9 504 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 RTKNQ9BST9 563 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 BLZF1Q9H2G9 400 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 VRTNQ9H8Y1 702 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms