RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 MMP8P22894 467 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 NOP2P46087 812 aaKnown RBP20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 BRCC3P46736 316 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 GATMP50440 423 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 ELAVL2Q12926 359 aaKnown RBP20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 DENND1BQ6P3S1 775 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 ERICH1Q86X53 443 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 DNAAF5Q86Y56 855 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 THEM5Q8N1Q8 247 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 B3GALNT2Q8NCR0 500 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 C1orf131Q8NDD1 294 aaKnown RBP20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 SLC35G2Q8TBE7 412 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 ZNF592Q92610 1267 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 RABGGTAQ92696 567 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 WDR24Q96S15 920 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 YME1L1Q96TA2 773 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 ACBD6Q9BR61 282 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 DNAJB4Q9UDY4 337 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 CNOT8Q9UFF9 292 aaKnown RBP20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 SALL4Q9UJQ4 1053 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 TSPAN16Q9UKR8 245 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 STRIP2Q9ULQ0 834 aa20.19■□□□□ 0.82
CSPG4P13-201ENST00000565545 CTAGE9A4FU28 777 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 NRP1O14786 923 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 BUB1O43683 1085 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 UPP2O95045 317 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 PTPN1P18031 435 aaKnown RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 HOXD11P31277 338 aaPredicted RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 SNX16P57768 344 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 PPP1R26Q5T8A7 1209 aaPredicted RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 PTCRAQ6ISU1 281 aaPredicted RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 EP400NLQ6ZTU2 488 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 SYCE1Q8N0S2 351 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 WDTC1Q8N5D0 677 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 C12orf29Q8N999 325 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 ARHGEF26Q96DR7 871 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 MRPL38Q96DV4 380 aaKnown RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 HNRNPABQ99729 332 aaKnown RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 NAPGQ99747 312 aaPredicted RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 DPEP3Q9H4B8 488 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 MRPL47Q9HD33 250 aaKnown RBP20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 C11orf16Q9NQ32 467 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 CTTNBP2NLQ9P2B4 639 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 ADAM28Q9UKQ2 775 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 JRKLQ9Y4A0 524 aa20.18■□□□□ 0.82
CSPG4P13-201ENST00000565545 ITGB1P05556 798 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 GALTP07902 379 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 GPD2P43304 727 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 HTRA4P83105 476 aaPredicted RBP20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 PTP4A2Q12974 167 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 GOLGA7BQ2TAP0 167 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 PAN2Q504Q3 1202 aaKnown RBP20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 PKDCCQ504Y2 493 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 OVOS1Q6IE37 1185 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 CMTR2Q8IYT2 770 aaKnown RBP20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 ANKRD52Q8NB46 1076 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 TPCN2Q8NHX9 752 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 STK32AQ8WU08 396 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 ZNF689Q96CS4 500 aaPredicted RBP20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 SAMD11Q96NU1 681 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 SYT15Q9BQS2 421 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 CYLDQ9NQC7 956 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 WDR35Q9P2L0 1181 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 PRG3Q9Y2Y8 225 aaPredicted RBP20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 CAPN6Q9Y6Q1 641 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 SCINQ9Y6U3 715 aa20.17■□□□□ 0.82
CSPG4P13-201ENST00000565545 IL9P15248 144 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 SLC11A1P49279 550 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 BCAT1P54687 386 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 GSCP56915 257 aaPredicted RBP20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 GPM6BQ13491 265 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 TUBB2AQ13885 445 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 MAPRE1Q15691 268 aaKnown RBP20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 PUS10Q3MIT2 529 aaKnown RBP20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 MMS22LQ6ZRQ5 1243 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 HASPINQ8TF76 798 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 C11orf70Q9BRQ4 267 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 TUBB2BQ9BVA1 445 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 NUP85Q9BW27 656 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 LCMT1Q9UIC8 334 aa20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 TIMM13Q9Y5L4 95 aaPredicted RBP20.16■□□□□ 0.82
CSPG4P13-201ENST00000565545 BRWD1Q9NSI6 2320 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 I3L4J1 428 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 OAZ2O95190 189 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 GABRB2P47870 512 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 ALDH7A1P49419 539 aaKnown RBP20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 SLC8A3P57103 927 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 PLCB3Q01970 1234 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 YWHAHQ04917 246 aaPredicted RBP20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 BST2Q10589 180 aaKnown RBP20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 PLEKHA7Q6IQ23 1121 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 SLFN11Q7Z7L1 901 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 MYCBPAPQ8TBZ2 947 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 ZNF564Q8TBZ8 553 aaPredicted RBP20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 SP7Q8TDD2 431 aaPredicted RBP20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 IPO4Q8TEX9 1081 aaKnown RBP20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 C18orf8Q96DM3 657 aa20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 OXCT2Q9BYC2 517 aaPredicted RBP20.15■□□□□ 0.82
CSPG4P13-201ENST00000565545 RC3H2Q9HBD1 1191 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms