RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GCNT4Q9P109 453 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 MAGEC2Q9UBF1 373 aaPredicted RBP15.89■□□□□ 0.13
CLN3-213ENST00000565047 R3HCC1Q9Y3T6 440 aaKnown RBP15.89■□□□□ 0.13
CLN3-213ENST00000565047 R4GN57 208 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 GREB1Q4ZG55 1949 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 OTOL1A6NHN0 477 aaPredicted RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 MAPK13O15264 365 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 NCAM2O15394 837 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 PTPN1P18031 435 aaKnown RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 BDNFP23560 247 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 CCNE1P24864 410 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 CDH8P55286 799 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 USP46P62068 366 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 TNK2Q07912 1038 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 MTAPQ13126 283 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 ZNF268Q14587 947 aaPredicted RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 MAPRE1Q15691 268 aaKnown RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 PAQR9Q6ZVX9 377 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 GUF1Q8N442 669 aaKnown RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 SYAP1Q96A49 352 aaPredicted RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 MSANTD3Q96H12 275 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 GCNAQ96QF7 691 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 TTLL2Q9BWV7 592 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 B3GNT5Q9BYG0 378 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 SEMA4AQ9H3S1 761 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 SMYD3Q9H7B4 428 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 C8orf33Q9H7E9 229 aaPredicted RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 HPS4Q9NQG7 708 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 TDP1Q9NUW8 608 aa15.88■□□□□ 0.13
CLN3-213ENST00000565047 SPATA6Q9NWH7 488 aaPredicted RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 NDRG2Q9UN36 371 aaKnown RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 MAGED2Q9UNF1 606 aaPredicted RBP15.88■□□□□ 0.13
CLN3-213ENST00000565047 SPECC1L-ADORA2AF8WAN1 911 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 IKBKBO14920 756 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 AKAP3O75969 853 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 CTHP32929 405 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 TNNC1P63316 161 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 ZXDBP98169 803 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 PLCB2Q00722 1185 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 TRPC3Q13507 836 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 NCOA4Q13772 614 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 TAF12Q16514 161 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 MDH1BQ5I0G3 518 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 SV2AQ7L0J3 742 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 RALGPS2Q86X27 583 aaPredicted RBP15.87■□□□□ 0.13
CLN3-213ENST00000565047 SCN4BQ8IWT1 228 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 YAF2Q8IY57 180 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 ZBTB44Q8NCP5 570 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 OR6B3Q8NGW1 331 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 SPATA20Q8TB22 786 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 C8orf48Q96LL4 319 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 CYP2S1Q96SQ9 504 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 SNX25Q9H3E2 840 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 LMAN1LQ9HAT1 526 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 GKN1Q9NS71 199 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 UXTQ9UBK9 157 aaPredicted RBP15.87■□□□□ 0.13
CLN3-213ENST00000565047 NXF1Q9UBU9 619 aaKnown RBP15.87■□□□□ 0.13
CLN3-213ENST00000565047 MAPK8IP1Q9UQF2 711 aa15.87■□□□□ 0.13
CLN3-213ENST00000565047 ANAPC1Q9H1A4 1944 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 DCHS1Q96JQ0 3298 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 FRYLO94915 3013 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 DPYSL4O14531 572 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 LAMTOR5O43504 91 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 CALUO43852 315 aaPredicted RBP15.86■□□□□ 0.13
CLN3-213ENST00000565047 ASS1P00966 412 aaKnown RBP15.86■□□□□ 0.13
CLN3-213ENST00000565047 AVPR1AP37288 418 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 NOP14P78316 857 aaKnown RBP15.86■□□□□ 0.13
CLN3-213ENST00000565047 CYP27A1Q02318 531 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 ENPEPQ07075 957 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 C1orf228Q6PIY5 440 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 B3GALNT2Q8NCR0 500 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 TTC8Q8TAM2 541 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 CSGALNACT1Q8TDX6 532 aa15.86■□□□□ 0.13
CLN3-213ENST00000565047 MRPS31Q92665 395 aaKnown RBP15.86■□□□□ 0.13
CLN3-213ENST00000565047 RIF1Q5UIP0 2472 aaKnown RBP15.85■□□□□ 0.13
CLN3-213ENST00000565047 C2orf78A6NCI8 922 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 A8MXQ7 604 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 F8VP50 259 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 CLDN5O00501 218 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 LILRB5O75023 590 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 PHACTR2O75167 634 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 TCF3P15923 654 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 NR2F2P24468 414 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 GRIK1P39086 918 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 RAP1GAPP47736 663 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 CSTF1Q05048 431 aaKnown RBP15.85■□□□□ 0.13
CLN3-213ENST00000565047 PPP3CAQ08209 521 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 CCINQ13939 588 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 ZNF77Q15935 545 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 ZNF699Q32M78 642 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 SUMF1Q8NBK3 374 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 IER2Q9BTL4 223 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 ZNF518BQ9C0D4 1074 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 KIF9Q9HAQ2 790 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 IL37Q9NZH6 218 aa15.85■□□□□ 0.13
CLN3-213ENST00000565047 ZNF840PA6NDX5 716 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 TNFRSF10BO14763 440 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 TRIM66O15016 1216 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 KIF20AO95235 890 aa15.84■□□□□ 0.13
CLN3-213ENST00000565047 OLFM2O95897 454 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms